ggKbase home page

13_1_40cm_4_scaffold_849

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_849_1
unknown

Not on your lists

3..77
DNA (75bp) protein (25aa)

This feature has no annotations

13_1_40cm_4_scaffold_849_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

79..1119
DNA (1041bp) protein (347aa)
ABC-type metal ion transporter, periplasmic subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XT05_9BACT
troA; periplasmic zinc binding protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
troA; periplasmic zinc binding protein
13_1_40cm_4_scaffold_849_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1136..1963
DNA (828bp) protein (276aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XT04_9BACT
ABC-3 protein; K02075 zinc/manganese transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
ABC-3 protein
13_1_40cm_4_scaffold_849_4
unknown

Not on your lists

1969..2292
DNA (324bp) protein (108aa)

This feature has no annotations

13_1_40cm_4_scaffold_849_5
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2407..4707
DNA (2301bp) protein (767aa)
TonB-dependent outer membrane transport protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7Q7_GEMAT
TonB-dependent outer membrane transport protein
TonB-dependent outer membrane transport protein {ECO:0000313|EMBL:BAH38267.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimon
13_1_40cm_4_scaffold_849_6
unknown

Not on your lists

4774..5427
DNA (654bp) protein (218aa)

This feature has no annotations

13_1_40cm_4_scaffold_849_7
unknown

Not on your lists

5424..6059
DNA (636bp) protein (212aa)

This feature has no annotations

13_1_40cm_4_scaffold_849_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

6117..8384
DNA (2268bp) protein (756aa)
malic enzyme (EC:1.1.1.40); K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XW7_SOLUE
phosphate acetyl/butaryl transferase
13_1_40cm_4_scaffold_849_9
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

8381..10000
DNA (1620bp) protein (540aa)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9N1_GEMAT
Phosphoenolpyruvate carboxykinase [ATP]
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:00
13_1_40cm_4_scaffold_849_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

9997..11268
DNA (1272bp) protein (424aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9N5_GEMAT
hypothetical protein; K06885 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
metal-dependent phosphohydrolase HD sub domain-containing protein
13_1_40cm_4_scaffold_849_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(11497..12210)
DNA (714bp) protein (238aa)
putative serine/threonine protein phosphatase (EC:3.1.3.16); K01090 protein phosphatase [EC:3.1.3.16] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
putative serine/threonine protein phosphatase (EC:3.1.3.16)
Putative serine/threonine protein phosphatase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9N8_GEMAT
13_1_40cm_4_scaffold_849_12
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(12289..12960)
DNA (672bp) protein (224aa)
ABC transporter ATPase n=1 Tax=Streptomyces sp. FxanaC1 RepID=UPI00035CDD34
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
FHA domain-containing protein
13_1_40cm_4_scaffold_849_13
unknown

Not on your lists

13266..13748
DNA (483bp) protein (161aa)

This feature has no annotations

13_1_40cm_4_scaffold_849_14
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13854..14936)
DNA (1083bp) protein (361aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y147_SORCE
hypothetical protein; K07027 Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_849_15
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

15048..17852
DNA (2805bp) protein (935aa)
UvrABC system protein A n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9P0_GEMAT
uvrA; UvrABC system protein A; K03701 excinuclease ABC subunit A Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
excinuclease ABC, A subunit
13_1_40cm_4_scaffold_849_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17852..19405
DNA (1554bp) protein (518aa)
Response regulator receiver id=3068376 bin=GWC2_Methylomirabilis_70_16 species=delta proteobacterium MLMS-1 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histidine kinase Tax=GWC2_Rokubacteria_70_16_curated
histidine kinase
13_1_40cm_4_scaffold_849_17
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

Not on your lists

19410..20279
DNA (870bp) protein (290aa)
hypothetical protein id=7202063 bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein Tax=RIFOXYC12_FULL_TA06_54_24_curated
hypothetical protein
13_1_40cm_4_scaffold_849_trna_1
unknown

Not on your lists

20316..20388
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_849_18
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

20405..22384
DNA (1980bp) protein (660aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Putative uncharacterized protein id=4197759 bin=GWC2_Deltaproteobacteria_66_88 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
PAS sensor protein
13_1_40cm_4_scaffold_849_19
RBG_13_Nitrospirae_43_8_curated, Nitrospirae, Bacteria

Not on your lists

22447..22890
DNA (444bp) protein (148aa)
sensory transduction regulatory protein Tax=RBG_13_Nitrospirae_43_8_curated
response regulator receiver protein id=14426277 bin=bin1_lowGC species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=bin1_lowGC organism_group=Unknown_CP
response regulator receiver protein
13_1_40cm_4_scaffold_849_20
RBG_19FT_COMBO_Euryarchaeota_69_17_curated, Euryarchaeota, Archaea

Not on your lists

23145..24392
DNA (1248bp) protein (416aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVJ9_OPITP
PAS/PAC sensor signal transduction histidine kinase Tax=RBG_19FT_COMBO_Euryarchaeota_69_17_curated
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_849_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

24380..25513
DNA (1134bp) protein (378aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Multi-sensor hybrid histidine kinase id=4788462 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative PAS/PAC sensor protein
13_1_40cm_4_scaffold_849_22
CG_Rhodof_01, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25510..28518
DNA (3009bp) protein (1003aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D44A0D
multi-sensor hybrid histidine kinase Tax=CG_Rhodof_01
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_849_23
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

28511..29107
DNA (597bp) protein (199aa)
Response regulator receiver protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EKM4_CORAD
response regulator receiver protein Tax=CG_Arma_02
response regulator receiver protein
13_1_40cm_4_scaffold_849_24
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

29176..29622
DNA (447bp) protein (149aa)
Response regulator receiver protein n=1 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U0E8_9CYAN
Chemotaxis protein CheY {ECO:0000313|EMBL:KIF19105.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
response regulator receiver protein
13_1_40cm_4_scaffold_849_25
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

29709..32498
DNA (2790bp) protein (930aa)
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:ABF42015.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ABF42015.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Cand
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-)
Multi-sensor hybrid histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM85_KORVE
13_1_40cm_4_scaffold_849_26
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(32508..35381)
DNA (2874bp) protein (958aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM85_KORVE
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
multi-sensor hybrid histidine kinase
Displaying 27 items

View Taxonomy