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13_1_40cm_4_scaffold_1007

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1007_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3..503
DNA (501bp) protein (167aa)
Putative uncharacterized protein id=3942769 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
actA; menaquinol oxidoreductase complex ACIII, cytochrome c subunit ActA
13_1_40cm_4_scaffold_1007_2
unknown

Not on your lists

639..917
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_4_scaffold_1007_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

956..1162
DNA (207bp) protein (69aa)
id=4918775 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4918775 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_1007_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1211..4633)
DNA (3423bp) protein (1141aa)
methionine synthase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methionine synthase id=4620328 bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methionine synthase
13_1_40cm_4_scaffold_1007_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5099..5812
DNA (714bp) protein (238aa)
dehydratase/racemase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative dehydratase/racemase id=4472498 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydratase/racemase
13_1_40cm_4_scaffold_1007_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5822..6115
DNA (294bp) protein (98aa)
id=4871534 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4871534 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_1007_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6146..7492
DNA (1347bp) protein (449aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4472500 bin=GWA2_Methylomirabilis_73_35 species=Synergistes sp. 3_1_syn1 genus=Synergistes taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1007_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7508..7750
DNA (243bp) protein (81aa)
Alkylhydroperoxidase like protein, AhpD family id=4935478 bin=GWC2_Methylomirabilis_70_24 species=Alkaliphilus metalliredigens genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alkylhydroperoxidase Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_1007_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7859..8038
DNA (180bp) protein (60aa)
Carboxymuconolactone decarboxylase family protein id=4935479 bin=GWC2_Methylomirabilis_70_24 species=Octadecabacter arcticus genus=Octadecabacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Carboxymuconolactone decarboxylase family protein Tax=GWA2_Rokubacteria_70_23_curated
alkylhydroperoxidase
13_1_40cm_4_scaffold_1007_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8035..8694
DNA (660bp) protein (220aa)
Predicted protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Predicted protein id=4472501 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Micromonas taxon_order=Mamiellales taxon_class=Mamiellophyceae phylum=Chlorophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1007_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8832..9833)
DNA (1002bp) protein (334aa)
Hypothetical lipoprotein n=1 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=Q5GRD1_ALCXX
NMT1/THI5 like family protein 6 Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
ABC transporter periplasmic ligand-binding protein
13_1_40cm_4_scaffold_1007_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9868..10773)
DNA (906bp) protein (302aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
2-hydroxy-3-oxopropionate reductase id=4472507 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1007_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10773..11339)
DNA (567bp) protein (189aa)
Endoribonuclease L-PSP id=4472509 bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
endoribonuclease L-PSP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
translation initiation inhibitor
13_1_40cm_4_scaffold_1007_14
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11375..11764
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0PV55_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL24406.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
13_1_40cm_4_scaffold_1007_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11929..12609
DNA (681bp) protein (227aa)
short-chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=4472514 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_4_scaffold_1007_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12810..13730
DNA (921bp) protein (307aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3'-5' exonuclease id=4472621 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3'-5' exonuclease
13_1_40cm_4_scaffold_1007_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13744..14190
DNA (447bp) protein (149aa)
CoA-binding domain-containing protein; K06929 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
CoA-binding domain protein id=4472625 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CoA-binding domain-containing protein
13_1_40cm_4_scaffold_1007_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14448..16127
DNA (1680bp) protein (560aa)
ABC transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=4478788 bin=GWF2_Methylomirabilis_70_14 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_4_scaffold_1007_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16103..16807)
DNA (705bp) protein (235aa)
spermidine synthase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Spermidine synthase id=4472637 bin=GWA2_Methylomirabilis_73_35 species=Gallaecimonas xiamenensis genus=Gallaecimonas taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1007_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17013..17780)
DNA (768bp) protein (256aa)
3-hydroxyacyl-CoA dehydrogenase type II (EC:1.1.1.35)
putative short chain dehydrogenase id=4478784 bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia sp. P1 genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hsd17b10, abad, camr, erab, hadh2, hcd2, hsd10, mhbd, mrpp2, mrx17, mrx31, mrxs10, schad, sdr5c1; hydroxysteroid (17-beta) dehydrogenase 10; K08683 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methyl
13_1_40cm_4_scaffold_1007_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17899..19605
DNA (1707bp) protein (569aa)
radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Radical SAM domain protein id=4478783 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM protein
13_1_40cm_4_scaffold_1007_22
unknown

Not on your lists

19796..19996
DNA (201bp) protein (67aa)

This feature has no annotations

13_1_40cm_4_scaffold_1007_23
unknown

Not on your lists

20077..20169
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_4_scaffold_1007_24
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20434..21708)
DNA (1275bp) protein (425aa)
Cardiolipin synthetase {ECO:0000313|EMBL:CDS54800.1}; EC=2.7.8.- {ECO:0000313|EMBL:CDS54800.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; P
Phospholipase D/Transphosphatidylase n=1 Tax=Thiobacillus denitrificans (strain ATCC 25259) RepID=Q3SJZ2_THIDA
phospholipase D/transphosphatidylase
13_1_40cm_4_scaffold_1007_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22083..22637
DNA (555bp) protein (185aa)
recombinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RecA domain protein id=4472640 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recombinase A
13_1_40cm_4_scaffold_1007_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

22619..24193
DNA (1575bp) protein (525aa)
Putative uncharacterized protein id=4472641 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_1007_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24450..27749
DNA (3300bp) protein (1100aa)
dnaE1; DNA polymerase III, alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7] Tax=GWA2_Rokubacteria_73_35_curated
DNA polymerase III, alpha subunit subfamily, putative n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLP8_9BACT
DNA polymerase III subunit alpha
13_1_40cm_4_scaffold_1007_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

27788..28192
DNA (405bp) protein (135aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_1007_29
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28412..28729
DNA (318bp) protein (106aa)
Transport-associated n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZMA1_OPITP
transport-associated protein; K04065 hyperosmotically inducible periplasmic protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
transport-associated
13_1_40cm_4_scaffold_1007_30
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

28840..30240
DNA (1401bp) protein (467aa)
acetoacetate metabolism regulatory protein AtoC n=1 Tax=candidate division NC10 bacterium UW 659-1-D11 RepID=UPI00036C7B55
response regulator in two-component regulatory system, sigma 54-dependent
Putative response regulator in two-component regulatory system, sigma 54-dependent {ECO:0000313|EMBL:CBE68926.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;
Displaying items 1-30 of 35 in total

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