ggKbase home page

13_1_40cm_4_scaffold_109

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_109_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3..584)
DNA (582bp) protein (194aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3051785 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NIPSNAP family protein
13_1_40cm_4_scaffold_109_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(600..1052)
DNA (453bp) protein (151aa)
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=14626931 bin=bin7_NC10_sister species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5)
13_1_40cm_4_scaffold_109_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(1060..1698)
DNA (639bp) protein (213aa)
nuoB; NADH dehydrogenase I subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NAD; NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase subunit 10) (EC:1.6.5.3) id=14626932 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
nuoB; NADH dehydrogenase I subunit B
13_1_40cm_4_scaffold_109_4
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(1689..2042)
DNA (354bp) protein (118aa)
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nuoA; NADH-quinone oxidoreductase, subunit A id=14626933 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
13_1_40cm_4_scaffold_109_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2121..2699
DNA (579bp) protein (193aa)
id=2696010 Tax=GWC2_Rokubacteria_70_16_curated
id=2696010 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_109_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2737..3435
DNA (699bp) protein (233aa)
rpfC; two-component system sensor-response regulator hybrid protein RpfC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sigma-54 factor interaction domain-containing protein id=2883274 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulatory protein ompR
13_1_40cm_4_scaffold_109_7
unknown

Not on your lists

3621..3827
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_109_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3835..4038
DNA (204bp) protein (68aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=2507307 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_40cm_4_scaffold_109_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4019..4342)
DNA (324bp) protein (108aa)
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_109_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4360..5520)
DNA (1161bp) protein (387aa)
iorB_II; Indolepyruvate oxidoreductase subunit IorB II (EC:1.2.7.8)
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-oxoacid:ferredoxin oxidoreductase, gamma subunit id=1906446 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_109_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5517..7655)
DNA (2139bp) protein (713aa)
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=GWA2_Rokubacteria_73_35_curated
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
13_1_40cm_4_scaffold_109_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

Not on your lists

7766..8383
DNA (618bp) protein (206aa)
ligD; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative DNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A819_9SPHN
ATP dependent DNA ligase
13_1_40cm_4_scaffold_109_13
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8380..9435
DNA (1056bp) protein (352aa)
DNA ligase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036C347A
Uncharacterized protein {ECO:0000313|EMBL:EJZ29763.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source=
hypothetical protein
13_1_40cm_4_scaffold_109_trna_1
unknown

Not on your lists

9888..9960
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_109_14
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11096..13180
DNA (2085bp) protein (695aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3) Tax=RBG_16_Deltaproteobacteria_50_11_curated
Histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_109_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13280..14086)
DNA (807bp) protein (269aa)
Glycosyl transferase 2 family protein id=4379990 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycosyl transferase 2 family protein Tax=GWA2_Rokubacteria_73_35_curated
glycosyltransferase
13_1_40cm_4_scaffold_109_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14083..14517)
DNA (435bp) protein (145aa)
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) id=1906303 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_4_scaffold_109_17
unknown

Not on your lists

14559..14723
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_40cm_4_scaffold_109_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14764..15411)
DNA (648bp) protein (216aa)
type 12 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 12 id=1906302 bin=GWA2_Methylomirabilis_73_35 species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase
13_1_40cm_4_scaffold_109_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15389..16741)
DNA (1353bp) protein (451aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1906301 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_109_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16933..17640)
DNA (708bp) protein (236aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transport system protein id=4288073 bin=GWF2_Methylomirabilis_70_14 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_4_scaffold_109_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17640..18560)
DNA (921bp) protein (307aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type transport system permease protein II (Probable substrates branched-chain/neutral amino acids) 2 id=4288070 bin=GWF2_Methylomirabilis_70_14 species=Marinobacter sp. ELB17 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_4_scaffold_109_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18557..19435)
DNA (879bp) protein (293aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid ABC transporter permease protein I id=1906297 bin=GWA2_Methylomirabilis_73_35 species=Haloarcula vallismortis genus=Haloarcula taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
13_1_40cm_4_scaffold_109_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19599..20792)
DNA (1194bp) protein (398aa)
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=4288064 bin=GWF2_Methylomirabilis_70_14 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
13_1_40cm_4_scaffold_109_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20816..22051
DNA (1236bp) protein (412aa)
L-carnitine dehydratase/bile acid-inducible protein F id=14625352 bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F Tax=CSP1_6_Rokubacteria
L-carnitine dehydratase/bile acid-inducible protein F
13_1_40cm_4_scaffold_109_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22076..22576)
DNA (501bp) protein (167aa)
id=3674960 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3674960 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_109_26
unknown

Not on your lists

22645..22788
DNA (144bp) protein (48aa)

This feature has no annotations

13_1_40cm_4_scaffold_109_27

Not on your lists

23016..23780
DNA (765bp) protein (255aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK76744.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_4_scaffold_109_28
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(24220..25599)
DNA (1380bp) protein (460aa)
acyltransferase domain-containing protein id=14627706 bin=bin7_NC10_sister species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyltransferase domain-containing protein Tax=CSP1_6_Rokubacteria
acyltransferase domain-containing protein
13_1_40cm_4_scaffold_109_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(25628..26023)
DNA (396bp) protein (132aa)
UPF0076 protein id=4219924 bin=GWC2_Methylomirabilis_70_24 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
UPF0076 protein Tax=GWA2_Rokubacteria_70_23_curated
endoribonuclease L-PSP
Displaying items 1-30 of 80 in total

View Taxonomy