name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
13_1_40cm_4_scaffold_109_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria
|
Not on your lists |
comp(3..584)
|
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=3051785 bin=GWF2_Methylomirabilis_70_14 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NIPSNAP family protein
|
|
13_1_40cm_4_scaffold_109_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria
|
Not on your lists |
comp(600..1052)
|
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NADH (or F420H2) dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3] id=14626931 bin=bin7_NC10_sister species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
NADH (or F420H2) dehydrogenase subunit C (EC:1.6.99.5)
|
|
13_1_40cm_4_scaffold_109_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria
|
Not on your lists |
comp(1060..1698)
|
nuoB; NADH dehydrogenase I subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
NAD; NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase subunit 10) (EC:1.6.5.3) id=14626932 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
nuoB; NADH dehydrogenase I subunit B
|
|
13_1_40cm_4_scaffold_109_4
R_Rokubacteria_69_13, Rokubacteria, Bacteria
|
Not on your lists |
comp(1689..2042)
|
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
nuoA; NADH-quinone oxidoreductase, subunit A id=14626933 bin=bin7_NC10_sister species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin7_NC10_sister organism_group=NC10
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
|
|
13_1_40cm_4_scaffold_109_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria
|
Not on your lists |
2121..2699
|
id=2696010 Tax=GWC2_Rokubacteria_70_16_curated
id=2696010 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
|
|
13_1_40cm_4_scaffold_109_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
2737..3435
|
rpfC; two-component system sensor-response regulator hybrid protein RpfC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sigma-54 factor interaction domain-containing protein id=2883274 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulatory protein ompR
|
|
13_1_40cm_4_scaffold_109_7
unknown
|
Not on your lists |
3621..3827
|
This feature has no annotations |
|
13_1_40cm_4_scaffold_109_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria
|
Not on your lists |
3835..4038
|
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=2507307 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
|
|
13_1_40cm_4_scaffold_109_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(4019..4342)
|
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
|
|
13_1_40cm_4_scaffold_109_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(4360..5520)
|
iorB_II; Indolepyruvate oxidoreductase subunit IorB II (EC:1.2.7.8)
ifoB_iorB; indolepyruvate ferredoxin oxidoreductase, beta subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-oxoacid:ferredoxin oxidoreductase, gamma subunit id=1906446 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
|
|
13_1_40cm_4_scaffold_109_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
|
Not on your lists |
comp(5517..7655)
|
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1906308 bin=GWA2_Methylomirabilis_73_35 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ifoA_iorA; indolepyruvate ferredoxin oxidoreductase, alpha subunit Tax=GWA2_Rokubacteria_73_35_curated
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein
|
|
13_1_40cm_4_scaffold_109_12
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria
|
Not on your lists |
7766..8383
|
ligD; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
Putative DNA ligase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A819_9SPHN
ATP dependent DNA ligase
|
|
13_1_40cm_4_scaffold_109_13
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8380..9435
|
DNA ligase n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036C347A
Uncharacterized protein {ECO:0000313|EMBL:EJZ29763.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source=
hypothetical protein
|
|
13_1_40cm_4_scaffold_109_trna_1
unknown
|
Not on your lists |
9888..9960
|
transferRNA
|
|
13_1_40cm_4_scaffold_109_14
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11096..13180
|
GAF sensor hybrid histidine kinase (EC:2.7.13.3) Tax=RBG_16_Deltaproteobacteria_50_11_curated
Histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
|
|
13_1_40cm_4_scaffold_109_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
|
Not on your lists |
comp(13280..14086)
|
Glycosyl transferase 2 family protein id=4379990 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Glycosyl transferase 2 family protein Tax=GWA2_Rokubacteria_73_35_curated
glycosyltransferase
|
|
13_1_40cm_4_scaffold_109_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(14083..14517)
|
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) id=1906303 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
|
|
13_1_40cm_4_scaffold_109_17
unknown
|
Not on your lists |
14559..14723
|
This feature has no annotations |
|
13_1_40cm_4_scaffold_109_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(14764..15411)
|
type 12 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 12 id=1906302 bin=GWA2_Methylomirabilis_73_35 species=Nakamurella multipartita genus=Nakamurella taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase
|
|
13_1_40cm_4_scaffold_109_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(15389..16741)
|
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1906301 bin=GWA2_Methylomirabilis_73_35 species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
|
|
13_1_40cm_4_scaffold_109_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(16933..17640)
|
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transport system protein id=4288073 bin=GWF2_Methylomirabilis_70_14 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
|
|
13_1_40cm_4_scaffold_109_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria
|
Not on your lists |
comp(17640..18560)
|
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC-type transport system permease protein II (Probable substrates branched-chain/neutral amino acids) 2 id=4288070 bin=GWF2_Methylomirabilis_70_14 species=Marinobacter sp. ELB17 genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
|
|
13_1_40cm_4_scaffold_109_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(18557..19435)
|
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Branched-chain amino acid ABC transporter permease protein I id=1906297 bin=GWA2_Methylomirabilis_73_35 species=Haloarcula vallismortis genus=Haloarcula taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
|
|
13_1_40cm_4_scaffold_109_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(19599..20792)
|
extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type branched-chain amino acid transport system, periplasmic component id=4288064 bin=GWF2_Methylomirabilis_70_14 species=Idiomarina sp. A28L genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
extracellular ligand-binding receptor
|
|
13_1_40cm_4_scaffold_109_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria
|
Not on your lists |
20816..22051
|
L-carnitine dehydratase/bile acid-inducible protein F id=14625352 bin=bin7_NC10_sister species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F Tax=CSP1_6_Rokubacteria
L-carnitine dehydratase/bile acid-inducible protein F
|
|
13_1_40cm_4_scaffold_109_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria
|
Not on your lists |
comp(22076..22576)
|
id=3674960 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3674960 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
|
|
13_1_40cm_4_scaffold_109_26
unknown
|
Not on your lists |
22645..22788
|
This feature has no annotations |
|
13_1_40cm_4_scaffold_109_27 |
Not on your lists |
23016..23780
|
Uncharacterized protein {ECO:0000313|EMBL:KKK76744.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
|
|
13_1_40cm_4_scaffold_109_28
CSP1_6_Rokubacteria, Rokubacteria, Bacteria
|
Not on your lists |
comp(24220..25599)
|
acyltransferase domain-containing protein id=14627706 bin=bin7_NC10_sister species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acyltransferase domain-containing protein Tax=CSP1_6_Rokubacteria
acyltransferase domain-containing protein
|
|
13_1_40cm_4_scaffold_109_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria
|
Not on your lists |
comp(25628..26023)
|
UPF0076 protein id=4219924 bin=GWC2_Methylomirabilis_70_24 species=Fibrella aestuarina genus=Fibrella taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
UPF0076 protein Tax=GWA2_Rokubacteria_70_23_curated
endoribonuclease L-PSP
|