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13_1_40cm_4_scaffold_1145

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1145_1
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

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3..1565
DNA (1563bp) protein (521aa)
Histidine kinase (EC:2.7.13.3) Tax=GWC2_RIF_CHLX_73_18_curated
Putative Histidine kinase id=2877061 bin=GWC2_Chloroflexi_73_18 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
PAS sensor protein
13_1_40cm_4_scaffold_1145_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1549..3132
DNA (1584bp) protein (528aa)
putative histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=4849342 bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histidine kinase
13_1_40cm_4_scaffold_1145_3
unknown

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3129..3368
DNA (240bp) protein (80aa)

This feature has no annotations

13_1_40cm_4_scaffold_1145_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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3365..4189
DNA (825bp) protein (275aa)
putative CheY-like response regulator Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Multi-sensor hybrid histidine kinase id=4549114 bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1145_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(4377..4706)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Sulfobacillus thermosulfidooxidans RepID=UPI0002F71D9D
phosphoenolpyruvate-protein kinase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_1145_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(4703..7300)
DNA (2598bp) protein (866aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] id=14626956 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=CSP1_6_Rokubacteria
DNA ligase D
13_1_40cm_4_scaffold_1145_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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7640..8521
DNA (882bp) protein (294aa)
Ku family containing protein; K10979 DNA end-binding protein Ku Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Ku family containing protein; K10979 DNA end-binding protein Ku id=14626955 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Ku family containing protein
13_1_40cm_4_scaffold_1145_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8532..9095
DNA (564bp) protein (188aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] id=14625160 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal peptidase I
13_1_40cm_4_scaffold_1145_9

Not on your lists

9142..9453
DNA (312bp) protein (104aa)
cytochrome-c peroxidase (EC:1.11.1.5)
Di-heme cytochrome c peroxidase n=1 Tax=Rhodopirellula europaea SH398 RepID=M5RVZ5_9PLAN
Marine sediment metagenome DNA, contig: S01H4_S14827 {ECO:0000313|EMBL:GAH12617.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
13_1_40cm_4_scaffold_1145_10
R_NC10_66_22, NC10, Bacteria

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9676..11091
DNA (1416bp) protein (472aa)
Extracellular solute-binding protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8FVU4_9CYAN
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
extracellular solute-binding protein
13_1_40cm_4_scaffold_1145_11
R_NC10_66_22, NC10, Bacteria

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11099..11890
DNA (792bp) protein (264aa)
Permease component of ABC-type sugar transporter n=1 Tax=Polaromonas sp. CF318 RepID=J3D3R5_9BURK
putative ABC transporter permease protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
ABC transporter permease
Displaying 11 items

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