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13_1_40cm_4_scaffold_1284

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1284_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14..1240)
DNA (1227bp) protein (409aa)
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83); K10206 LL-diaminopimelate aminotransferase [EC:2.6.1.83] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
diaminopimelate aminotransferase (EC:2.6.1.83)
L,L-diaminopimelate aminotransferase id=4231234 bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1284_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1263..2951)
DNA (1689bp) protein (563aa)
Metallo-beta-lactamase superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ComE-like competence protein id=4231236 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA internalization-related competence protein ComEC/Rec2
13_1_40cm_4_scaffold_1284_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3526..4011)
DNA (486bp) protein (162aa)
Helix-hairpin-helix motif (Fragment) id=4231238 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
competence protein ComEA; K02237 competence protein ComEA Tax=GWA2_Rokubacteria_73_35_curated
membrane protein
13_1_40cm_4_scaffold_1284_4
unknown

Not on your lists

4163..4441
DNA (279bp) protein (93aa)

This feature has no annotations

13_1_40cm_4_scaffold_1284_5
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4383..5528)
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Wenxinia marina RepID=UPI00037C113F
luciferase-like monooxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
Luciferase-like, subgroup
13_1_40cm_4_scaffold_1284_6
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5525..6313)
DNA (789bp) protein (263aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Rhizobium sp. CF080 RepID=J2JR38_9RHIZ
2-hydroxymuconic semialdehyde hydrolase
2-hydroxymuconic semialdehyde hydrolase {ECO:0000313|EMBL:CDN50870.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorh
13_1_40cm_4_scaffold_1284_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6333..7442)
DNA (1110bp) protein (370aa)
alcohol dehydrogenase zinc-binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Alcohol dehydrogenase zinc-binding domain protein id=4231240 bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alcohol dehydrogenase zinc-binding domain-containing protein
13_1_40cm_4_scaffold_1284_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7439..8668)
DNA (1230bp) protein (410aa)
lysC; aspartokinase (EC:2.7.2.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
lysC; aspartokinase (EC:2.7.2.4) id=14627626 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lysC; aspartokinase (EC:2.7.2.4)
13_1_40cm_4_scaffold_1284_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8744..9715)
DNA (972bp) protein (324aa)
membrane protein; K07027 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=2513752 bin=GWC2_Methylomirabilis_70_24 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_1284_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9733..10791)
DNA (1059bp) protein (353aa)
thrC_2; threonine synthase (EC:4.2.3.1); K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
L-threonine synthase (EC:4.2.3.1) id=14627619 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
thrC_2; threonine synthase (EC:4.2.3.1)
13_1_40cm_4_scaffold_1284_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10904..12211)
DNA (1308bp) protein (436aa)
hom; homoserine dehydrogenase (EC:1.1.1.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hom; homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase id=2513748 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_1284_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12213..13382)
DNA (1170bp) protein (390aa)
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLP-dependent aminotransferase, putative aspartate aminotransferase (EC:2.6.1.- 2.6.1.1) id=14627617 bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALSr1 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
class I and II aminotransferase
13_1_40cm_4_scaffold_1284_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13635..14894
DNA (1260bp) protein (420aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
peptidase M23 id=14627438 bin=bin7_NC10_sister species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
peptidase M23
13_1_40cm_4_scaffold_1284_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14845..15783)
DNA (939bp) protein (313aa)
alpha/beta fold family hydrolase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
esterase/lipase id=14627440 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
putative hydrolase or acyltransferase of alpha/beta superfamily
13_1_40cm_4_scaffold_1284_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16048..17034)
DNA (987bp) protein (329aa)
oppF; oligopeptide ABC transporter ATP-binding protein (EC:3.6.3.27); K02032 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptide ABC transporter ATP-binding protein id=3311237 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
oligopeptide/dipeptide ABC transporter ATPase
13_1_40cm_4_scaffold_1284_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17043..18020)
DNA (978bp) protein (326aa)
oppD; peptide ABC transporter ATP-binding protein (EC:3.6.3.24); K02031 peptide/nickel transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
oligopeptide ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein id=14627444 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
oligopeptide ABC transporter ATP-binding protein
13_1_40cm_4_scaffold_1284_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18217..19272)
DNA (1056bp) protein (352aa)
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
threonine aldolase; K01620 threonine aldolase [EC:4.1.2.5] id=14627445 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
threonine aldolase
13_1_40cm_4_scaffold_1284_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19278..20039)
DNA (762bp) protein (254aa)
comL; Competence lipoprotein ComL, putative; K05807 putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K05807 putative lipoprotein id=14627446 bin=bin7_NC10_sister species=Thalassiobium sp. R2A62 genus=Thalassobium taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
tetratricopeptide TPR_2 repeat protein
13_1_40cm_4_scaffold_1284_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20137..21282
DNA (1146bp) protein (382aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4656178 bin=GWF2_Methylomirabilis_70_14 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 19 items

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