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13_1_40cm_4_scaffold_1278

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1278_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3..224)
DNA (222bp) protein (74aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (EC:1.1.1.-) Tax=CSP1_6_Rokubacteria
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (2,5-ddol dehydrogenase) id=4374707 bin=GWF2_Methylomirabilis_70_14 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_4_scaffold_1278_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(302..1681)
DNA (1380bp) protein (460aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] id=14625120 bin=bin7_NC10_sister species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] Tax=CSP1_6_Rokubacteria
glutamine synthetase
13_1_40cm_4_scaffold_1278_3
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

1728..2984
DNA (1257bp) protein (419aa)
Major facilitator superfamily MFS_1 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Major facilitator superfamily MFS_1 id=14627704 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Major facilitator superfamily MFS_1
13_1_40cm_4_scaffold_1278_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3120..4307)
DNA (1188bp) protein (396aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14625121 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1278_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4317..4760)
DNA (444bp) protein (148aa)
rnc; ribonuclease 3; K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rnc; ribonuclease III; K03685 ribonuclease III [EC:3.1.26.3] id=14625122 bin=bin7_NC10_sister species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ribonuclease III
13_1_40cm_4_scaffold_1278_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4935..6203)
DNA (1269bp) protein (423aa)
fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=2638134 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-oxoacyl-(acyl-carrier-protein) synthase 2
13_1_40cm_4_scaffold_1278_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6206..6442)
DNA (237bp) protein (79aa)
acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
acpP; acyl carrier protein; K02078 acyl carrier protein id=14625124 bin=bin7_NC10_sister species=Desulfurobacterium sp. TC5-1 genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
acyl carrier protein
13_1_40cm_4_scaffold_1278_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6473..7222)
DNA (750bp) protein (250aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fabG; 3-oxoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase FabG id=2547036 bin=GWC2_Methylomirabilis_70_16 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1278_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7219..8154)
DNA (936bp) protein (312aa)
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] id=14625126 bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
malonyl CoA-acyl carrier protein transacylase
13_1_40cm_4_scaffold_1278_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8461..9441)
DNA (981bp) protein (327aa)
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-oxoacyl-[acyl-carrier-protein] synthase 3 id=2638121 bin=GWF2_Methylomirabilis_70_14 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III
13_1_40cm_4_scaffold_1278_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9438..10460)
DNA (1023bp) protein (341aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphate acyltransferase id=2547032 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
fatty acid/phospholipid synthesis protein PlsX
13_1_40cm_4_scaffold_1278_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(10474..10656)
DNA (183bp) protein (61aa)
rpmF; 50S ribosomal protein L32 RpmF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L32 id=4343491 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmF; 50S ribosomal protein L32 RpmF
13_1_40cm_4_scaffold_1278_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10678..11187)
DNA (510bp) protein (170aa)
hypothetical protein; K07040 uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4343489 bin=GWA2_Methylomirabilis_73_35 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1278_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11505..12188
DNA (684bp) protein (228aa)
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] id=14625131 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=CSP1_6_Rokubacteria
htpX-1; membrane-bound zinc-dependent protease HtpX
13_1_40cm_4_scaffold_1278_15
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12317..13693
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QN15_RALPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW90661.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii
13_1_40cm_4_scaffold_1278_16
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13690..15339
DNA (1650bp) protein (550aa)
Peptidase S41 n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF5_RALPI
peptidase S41
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_1_40cm_4_scaffold_1278_17
unknown

Not on your lists

15343..15513
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_4_scaffold_1278_18
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15494..15652
DNA (159bp) protein (53aa)
hypothetical protein
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_1_40cm_4_scaffold_1278_19
unknown

Not on your lists

15649..15753
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_40cm_4_scaffold_1278_20
unknown

Not on your lists

15761..15853
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_4_scaffold_1278_21
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

16113..16694
DNA (582bp) protein (194aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caldithrix abyssi DSM 13497 RepID=H1XV65_9BACT
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EHO40571.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
ECF subfamily RNA polymerase sigma-24 subunit
13_1_40cm_4_scaffold_1278_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

16681..17502
DNA (822bp) protein (274aa)
transmembrane transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
transmembrane transcriptional regulator id=14626590 bin=bin7_NC10_sister species=Cupriavidus basilensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
transmembrane transcriptional regulator
13_1_40cm_4_scaffold_1278_23
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

17536..18261
DNA (726bp) protein (242aa)
Putative lipoprotein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG39_9BACT
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:CBE68720.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_4_scaffold_1278_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

18421..19545
DNA (1125bp) protein (375aa)
Metallophosphoesterase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG40_9BACT
metallophosphoesterase
Metallophosphoesterase {ECO:0000313|EMBL:CBE68721.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_4_scaffold_1278_25
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

19584..20045
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG41_9BACT
hypothetical protein
hypothetical protein Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
13_1_40cm_4_scaffold_1278_26
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20064..20930
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HEB0_ANADF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS27056.1}; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" s
13_1_40cm_4_scaffold_1278_27
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20975..22351
DNA (1377bp) protein (459aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QN15_RALPI
Cytochrome oxidase {ECO:0000313|EMBL:EYS86810.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
hypothetical protein
13_1_40cm_4_scaffold_1278_28
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22348..23892
DNA (1545bp) protein (515aa)
Peptidase S41 n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF5_RALPI
peptidase S41
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_1_40cm_4_scaffold_1278_29
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23972..24130
DNA (159bp) protein (53aa)
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_1_40cm_4_scaffold_1278_30
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24123..24317
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QHY2_RALPI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW90664.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii
Displaying items 1-30 of 38 in total

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