ggKbase home page

13_1_40cm_4_scaffold_1368

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1368_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3..1313
DNA (1311bp) protein (437aa)
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=14626276 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
alanyl-tRNA synthetase
13_1_40cm_4_scaffold_1368_2
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1333..2082
DNA (750bp) protein (250aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=447217 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cy
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UAW7_ANASK
13_1_40cm_4_scaffold_1368_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2090..2770
DNA (681bp) protein (227aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4020045 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator Tax=GWA2_Rokubacteria_73_35_curated
transcriptional regulator
13_1_40cm_4_scaffold_1368_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2767..4017
DNA (1251bp) protein (417aa)
multi-sensor hybrid histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor hybrid histidine kinase id=4020048 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_1368_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4029..5066
DNA (1038bp) protein (346aa)
putative Zn-dependent hydrolase of beta-lactamase fold protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative Zn-dependent hydrolase of beta-lactamase fold protein id=14625801 bin=bin7_NC10_sister species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
putative Zn-dependent hydrolase of beta-lactamase fold protein
13_1_40cm_4_scaffold_1368_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5186..6346)
DNA (1161bp) protein (387aa)
SAM-dependent methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methyltransferase small; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] id=14626274 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
SAM-dependent methyltransferase
13_1_40cm_4_scaffold_1368_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6359..7117)
DNA (759bp) protein (253aa)
Methyltransferase type 11 id=4020054 bin=GWA2_Methylomirabilis_73_35 species=Planctomyces brasiliensis genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methyltransferase type 11 Tax=GWA2_Rokubacteria_73_35_curated
methyltransferase type 11
13_1_40cm_4_scaffold_1368_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7120..7986)
DNA (867bp) protein (289aa)
agmatinase (EC:3.5.3.11); K01480 agmatinase [EC:3.5.3.11] Tax=GWA2_Rokubacteria_70_23_curated
agmatinase (EC:3.5.3.11)
Agmatinase id=2880636 bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1368_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8013..8492)
DNA (480bp) protein (160aa)
pyruvoyl-dependent arginine decarboxylase (EC:4.1.1.19); K02626 arginine decarboxylase [EC:4.1.1.19] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyruvoyl-dependent arginine decarboxylase (EC:4.1.1.19); K02626 arginine decarboxylase [EC:4.1.1.19] id=14626271 bin=bin7_NC10_sister species=Methanocaldococcus jannaschii genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10
pyruvoyl-dependent arginine decarboxylase (EC:4.1.1.19)
13_1_40cm_4_scaffold_1368_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8874..9269
DNA (396bp) protein (132aa)
S-adenosylmethionine decarboxylase (EC:4.1.1.50)
S-adenosylmethionine decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
S-adenosylmethionine decarboxylase proenzyme id=3979797 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrooxidans genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1368_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9266..10186
DNA (921bp) protein (307aa)
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16) Tax=GWA2_Rokubacteria_73_35_curated
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16) id=14626269 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
speE; Spermidine synthase (Putrescine aminopropyltransferase) (PAPT) (SPDSY) (EC:2.5.1.16)
13_1_40cm_4_scaffold_1368_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10197..10463
DNA (267bp) protein (89aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3979802 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1368_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10642..11253
DNA (612bp) protein (204aa)
maf protein; K06287 septum formation protein Tax=GWA2_Rokubacteria_73_35_curated
MAF protein id=3979804 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
maf protein
13_1_40cm_4_scaffold_1368_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11222..12190)
DNA (969bp) protein (323aa)
Extracellular solute-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ssuA; sulfonate/nitrate/taurine transport system substrate-binding protein id=14626267 bin=bin7_NC10_sister species=Burkholderia sp. WSM4176 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter substrate-binding protein
13_1_40cm_4_scaffold_1368_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12252..12911
DNA (660bp) protein (220aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3979808 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1368_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13119..14219)
DNA (1101bp) protein (367aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase id=3979811 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1368_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14216..15085)
DNA (870bp) protein (290aa)
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
D-alanine--D-alanine ligase (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] id=14626264 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
D-alanine--D-alanine ligase (EC:6.3.2.4)
13_1_40cm_4_scaffold_1368_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15350..15784)
DNA (435bp) protein (145aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3979826 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1368_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15804..17771)
DNA (1968bp) protein (656aa)
rarA; polynucleotide enzyme with nucleotide triphosphate hydrolase domain Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative polynucleotide enzyme with nucleotide triphosphate hydrolase domain id=4329549 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rarA; polynucleotide enzyme with nucleotide triphosphate hydrolase domain
13_1_40cm_4_scaffold_1368_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17812..19194
DNA (1383bp) protein (461aa)
Outer membrane assembly lipoprotein YfiO id=3789304 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
outer membrane assembly lipoprotein YfiO Tax=GWA2_Rokubacteria_73_35_curated
outer membrane assembly lipoprotein YfiO
13_1_40cm_4_scaffold_1368_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19191..21920
DNA (2730bp) protein (910aa)
Lytic transglycosylase id=3789302 bin=GWA2_Methylomirabilis_73_35 species=Danio rerio genus=Danio taxon_order=Cypriniformes taxon_class=Actinopterygii phylum=Chordata tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uncharacterized LOC100535581 Tax=GWA2_Rokubacteria_73_35_curated
outer membrane assembly lipoprotein YfiO
13_1_40cm_4_scaffold_1368_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22140..24074
DNA (1935bp) protein (645aa)
aldehyde ferredoxin oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aldehyde ferredoxin oxidoreductase id=14626252 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_1368_trna_1
unknown

Not on your lists

24092..24164
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_1368_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24514..24888
DNA (375bp) protein (125aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor hybrid histidine kinase id=4699813 bin=GWA2_Methylomirabilis_73_35 species=Beijerinckia indica genus=Beijerinckia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative ATPase
13_1_40cm_4_scaffold_1368_24
RBG_19FT_COMBO_Nitrospirae_58_9_curated, Nitrospirae, Bacteria

Not on your lists

25037..25591
DNA (555bp) protein (185aa)
Osmotically-inducible protein Y n=1 Tax=Erwinia piriflorinigrans CFBP 5888 RepID=V5ZAU9_9ENTR
osmY; OsmY; K04065 hyperosmotically inducible periplasmic protein Tax=RBG_19FT_COMBO_Nitrospirae_58_9_curated
osmY; osmotically inducible protein Y precursor OsmY
13_1_40cm_4_scaffold_1368_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

25742..27328
DNA (1587bp) protein (529aa)
Exported protein id=3824568 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_1368_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(27371..28189)
DNA (819bp) protein (273aa)
Oxidoreductase, short-chain dehydrogenase/reductase family id=4994654 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
short chain dehydrogenase/reductase family oxidoreductase
13_1_40cm_4_scaffold_1368_trna_2
unknown

Not on your lists

28288..28362
DNA (75bp)
transferRNA
13_1_40cm_4_scaffold_1368_27
unknown

Not on your lists

28461..29171
DNA (711bp) protein (237aa)

This feature has no annotations

13_1_40cm_4_scaffold_1368_28

Not on your lists

comp(29168..29680)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Streptomyces davawensis JCM 4913 RepID=K4RDT5_9ACTO
Marine sediment metagenome DNA, contig: S01H1_C00258 {ECO:0000313|EMBL:GAF74512.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
Displaying items 1-30 of 43 in total

View Taxonomy