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13_1_40cm_4_scaffold_139

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_139_1
unknown

Not on your lists

comp(2..79)
DNA (78bp) protein (26aa)

This feature has no annotations

13_1_40cm_4_scaffold_139_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(256..510)
DNA (255bp) protein (85aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
13_1_40cm_4_scaffold_139_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

646..1872
DNA (1227bp) protein (409aa)
Extracellular ligand-binding receptor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Extracellular ligand-binding receptor id=4827657 bin=GWA2_Methylomirabilis_73_35 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_139_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1869..2642
DNA (774bp) protein (258aa)
Alpha/beta hydrolase fold Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha/beta hydrolase fold id=2940473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Alpha/beta hydrolase fold
13_1_40cm_4_scaffold_139_5
unknown

Not on your lists

2665..2808
DNA (144bp) protein (48aa)

This feature has no annotations

13_1_40cm_4_scaffold_139_6
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2784..2918
DNA (135bp) protein (45aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00037AC153
Uncharacterized protein {ECO:0000313|EMBL:KHD29989.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas den
hypothetical protein
13_1_40cm_4_scaffold_139_7
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

2932..3732
DNA (801bp) protein (267aa)
Methyltransferase type 11 n=1 Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HBS4_ANADF
type 11 methyltransferase Tax=RBG_16_Acidobacteria_64_8_curated
type 11 methyltransferase
13_1_40cm_4_scaffold_139_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3713..4597)
DNA (885bp) protein (295aa)
tartronate semialdehyde reductase (EC:1.1.1.60)
Tartronate semialdehyde reductase id=4547685 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Rahnella taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-hydroxy-3-oxopropionate reductase Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_139_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4677..5918)
DNA (1242bp) protein (414aa)
Extracellular ligand-binding receptor Tax=GWC2_Rokubacteria_70_16_curated
Extracellular ligand-binding receptor id=2654115 bin=GWC2_Methylomirabilis_70_24 species=beta proteobacterium CB genus=unknown taxon_order=unknown taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_139_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5943..6578)
DNA (636bp) protein (212aa)
isochorismatase hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Isochorismatase hydrolase id=4827652 bin=GWA2_Methylomirabilis_73_35 species=Hoeflea phototrophica genus=Hoeflea taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
isochorismatase hydrolase
13_1_40cm_4_scaffold_139_11
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(6575..7210)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Spirosoma spitsbergense RepID=UPI00035D4091
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
hypothetical protein
13_1_40cm_4_scaffold_139_12
Oxalobacteraceae bacterium IMCC9480, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7385..8608
DNA (1224bp) protein (408aa)
Extracellular ligand-binding receptor n=1 Tax=Oxalobacteraceae bacterium IMCC9480 RepID=F1VW52_9BURK
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EGF33166.1}; TaxID=937450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae.;" source="Oxalobacteraceae b
Extracellular ligand-binding receptor
13_1_40cm_4_scaffold_139_13
unknown

Not on your lists

8593..8907
DNA (315bp) protein (105aa)

This feature has no annotations

13_1_40cm_4_scaffold_139_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8904..10229
DNA (1326bp) protein (442aa)
UbiD family decarboxylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UbiD decarboxylase family protein id=4827625 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UbiD family decarboxylase
13_1_40cm_4_scaffold_139_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10244..10462
DNA (219bp) protein (73aa)
hypothetical protein
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627784 bin=bin7_NC10_sister species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_139_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10459..10794
DNA (336bp) protein (112aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UbiD decarboxylase family protein id=4827625 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfosporosinus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_139_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10791..12530)
DNA (1740bp) protein (580aa)
rne; ribonuclease, Rne/Rng family protein (EC:3.1.4.-)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
protein binding protein id=14626651 bin=bin7_NC10_sister species=Dasypus novemcinctus genus=Dasypus taxon_order=Cingulata taxon_class=Mammalia phylum=Chordata tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_139_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12524..13498)
DNA (975bp) protein (325aa)
Putative uncharacterized protein id=2338962 bin=GWA2_Methylomirabilis_73_35 species=Subdoligranulum sp. 4_3_54A2FAA genus=Subdoligranulum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Predicted dehydrogenases and related proteins Tax=GWA2_Rokubacteria_73_35_curated
Oxidoreductase
13_1_40cm_4_scaffold_139_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13542..14696
DNA (1155bp) protein (385aa)
propanoyl-CoA C-acyltransferase (EC:2.3.1.176); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=GWC2_Rokubacteria_70_16_curated
propanoyl-CoA C-acyltransferase (EC:2.3.1.176)
Propanoyl-CoA C-acyltransferase id=4813972 bin=GWC2_Methylomirabilis_70_16 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_139_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14689..15069
DNA (381bp) protein (127aa)
Putative uncharacterized protein id=3677765 bin=GWF2_Methylomirabilis_70_14 species=Methanocaldococcus villosus genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K07068 Tax=GWA2_Rokubacteria_70_23_curated
putative nucleic-acid-binding protein
13_1_40cm_4_scaffold_139_21
R_NC10_66_22, NC10, Bacteria

Not on your lists

15242..16312
DNA (1071bp) protein (357aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein id=14627729 bin=bin7_NC10_sister species=Nitrococcus mobilis genus=Nitrococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_139_22
CSP1_5_NC10, NC10, Bacteria

Not on your lists

16309..17406
DNA (1098bp) protein (366aa)
putative peptidase id=14428912 bin=bin3_NC10 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin3_NC10 organism_group=NC10
putative peptidase Tax=CSP1_5_NC10
putative peptidase
13_1_40cm_4_scaffold_139_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

17394..18494
DNA (1101bp) protein (367aa)
Tetratricopeptide TPR_1 repeat-containing protein id=3087640 bin=GWC2_Methylomirabilis_70_16 species=Treponema caldaria genus=Treponema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_4_scaffold_139_24
R_Elusimicrobia_61_10, Elusimicrobia, Bacteria

Not on your lists

18491..19546
DNA (1056bp) protein (352aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Elusimicrobia_61_10_curated
13_1_40cm_4_scaffold_139_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19543..20631
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AQQ1_PELPD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_139_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(20654..22987)
DNA (2334bp) protein (778aa)
Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein id=3729544 bin=GWF2_Methylomirabilis_70_14 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
dehydrogenase
13_1_40cm_4_scaffold_139_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23075..24397)
DNA (1323bp) protein (441aa)
Phenylacetate--CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30] Tax=GWA2_Rokubacteria_73_35_curated
Phenylacetate--CoA ligase id=4585789 bin=GWF2_Methylomirabilis_70_14 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phenylacetate-CoA ligase
13_1_40cm_4_scaffold_139_28
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(24397..24885)
DNA (489bp) protein (163aa)
(2Fe-2S)-binding protein; K03518 carbon-monoxide dehydrogenase small subunit [EC:1.2.99.2] Tax=GWC2_Rokubacteria_70_16_curated
(2Fe-2S)-binding protein id=4915854 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
(2Fe-2S)-binding protein
13_1_40cm_4_scaffold_139_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(24946..25815)
DNA (870bp) protein (290aa)
carbon-monoxide dehydrogenase; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] Tax=GWA2_Rokubacteria_70_23_curated
carbon-monoxide dehydrogenase (EC:1.2.99.2)
Carbon-monoxide dehydrogenase id=4915855 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_139_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25812..28241)
DNA (2430bp) protein (810aa)
molybdopterin binding oxidoreductase large subunit; K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Molybdopterin binding oxidoreductase large subunit id=3729535 bin=GWF2_Methylomirabilis_70_14 species=Geobacillus kaustophilus genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molybdopterin binding oxidoreductase large subunit
Displaying items 1-30 of 64 in total

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