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13_1_40cm_4_scaffold_166

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_166_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..601
DNA (600bp) protein (200aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell shape determining protein, MreB/Mrl family id=3227267 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rod shape-determining protein MreB
13_1_40cm_4_scaffold_166_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

601..849
DNA (249bp) protein (83aa)
Cell shape determining protein, MreB/Mrl family id=4317184 bin=GWA2_Methylomirabilis_73_35 species=Flexistipes sinusarabici genus=Flexistipes taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mreB; cell shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins Tax=GWA2_Rokubacteria_73_35_curated
rod shape-determining protein MreB
13_1_40cm_4_scaffold_166_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

880..1716
DNA (837bp) protein (279aa)
rod shape-determining protein MreC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell shape-determining protein MreC id=4317185 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium 293 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Rod shape-determining protein MreC
13_1_40cm_4_scaffold_166_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1722..2210
DNA (489bp) protein (163aa)
hypothetical protein; K03571 rod shape-determining protein MreD Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4317186 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_166_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2207..3724
DNA (1518bp) protein (506aa)
mrdA; penicillin-binding protein 2 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Cell elongation specific D,D-transpeptidase id=4317187 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
13_1_40cm_4_scaffold_166_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3721..3993
DNA (273bp) protein (91aa)
mrdA; penicillin-binding protein 2 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cell elongation specific D,D-transpeptidase id=4317187 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mrdA; penicillin-binding protein 2
13_1_40cm_4_scaffold_166_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4070..5164
DNA (1095bp) protein (365aa)
rod shape-determining protein RodA; K05837 rod shape determining protein RodA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rod shape-determining protein RodA id=3227259 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rod shape-determining protein RodA
13_1_40cm_4_scaffold_166_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5220..6749
DNA (1530bp) protein (510aa)
cafA; ribonuclease G; K08301 ribonuclease G [EC:3.1.26.-] Tax=GWA2_Rokubacteria_73_35_curated
ribonuclease; K08301 ribonuclease G [EC:3.1.26.-] id=14626887 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ribonuclease, Rne/Rng family
13_1_40cm_4_scaffold_166_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7103..7516
DNA (414bp) protein (138aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=3927613 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_166_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7603..7884
DNA (282bp) protein (94aa)
Uncharacterized protein id=3927621 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_4_scaffold_166_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7893..10121
DNA (2229bp) protein (743aa)
actP; copper-transporting P-type ATPase (EC:3.6.3.4) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
copA; Cu(2+)-binding/translocating P-type ATPase (EC:3.6.3.4)
Heavy metal translocating P-type ATPase id=4901297 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_166_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10133..10282
DNA (150bp) protein (50aa)
YHS domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
YHS domain protein id=3927626 bin=GWA2_Methylomirabilis_73_35 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
YHS domain-containing protein
13_1_40cm_4_scaffold_166_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10416..10643
DNA (228bp) protein (76aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_166_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10740..11672)
DNA (933bp) protein (311aa)
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glutamate formiminotransferase (EC:2.1.2.5); K00603 glutamate formiminotransferase [EC:2.1.2.5] id=14626883 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate formiminotransferase (EC:2.1.2.5)
13_1_40cm_4_scaffold_166_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11677..12696
DNA (1020bp) protein (340aa)
AIR synthase-like protein Tax=GWA2_Rokubacteria_73_35_curated
AIR synthase-like protein id=14626878 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
AIR synthase-like protein domain-containing protein
13_1_40cm_4_scaffold_166_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12701..14299
DNA (1599bp) protein (533aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2] Tax=GWA2_Rokubacteria_73_35_curated
ggt; gamma-glutamyltransferase (EC:2.3.2.2)
Gamma-glutamyltransferase id=3927636 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_166_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14305..14808
DNA (504bp) protein (168aa)
hypothetical protein id=3927638 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_166_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14759..16147)
DNA (1389bp) protein (463aa)
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1,4-alpha-glucan branching enzyme GlgB id=4799905 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
1,4-alpha-glucan branching protein
13_1_40cm_4_scaffold_166_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16122..17897)
DNA (1776bp) protein (592aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16] id=14631573 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
trehalose synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
trehalose synthase
13_1_40cm_4_scaffold_166_20
Nocardia vulneris, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18071..18433
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F1T8_9NOCA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIA64478.1}; TaxID=1141657 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia vulneris.;"
13_1_40cm_4_scaffold_166_21
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18434..18835
DNA (402bp) protein (134aa)
hypothetical protein Tax=RBG_16_Gamma2_65_34_curated
hypothetical protein id=14430026 bin=bin3_NC10 species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_166_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18869..20821)
DNA (1953bp) protein (651aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase id=4667512 bin=GWF2_Methylomirabilis_70_14 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_166_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20821..22080)
DNA (1260bp) protein (420aa)
Glycosyl transferase, family 2 id=5032667 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
glycosyl transferase
13_1_40cm_4_scaffold_166_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22077..23267)
DNA (1191bp) protein (397aa)
group 1 glycosyl transferase; K13057 trehalose synthase [EC:2.4.1.245] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=5032668 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_40cm_4_scaffold_166_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23264..23929)
DNA (666bp) protein (222aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=5032669 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_166_26
unknown

Not on your lists

comp(25085..26050)
DNA (966bp) protein (322aa)

This feature has no annotations

13_1_40cm_4_scaffold_166_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26622..27866)
DNA (1245bp) protein (415aa)
ADP-glucose pyrophosphorylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glucose-1-phosphate adenylyltransferase id=3927644 bin=GWA2_Methylomirabilis_73_35 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glgC; glucose-1-phosphate adenylyltransferase
13_1_40cm_4_scaffold_166_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(27870..29567)
DNA (1698bp) protein (566aa)
putative alpha-amylase (EC:3.2.1.1) Tax=GWA2_Rokubacteria_73_35_curated
putative alpha-amylase (EC:3.2.1.1)
Glycoside hydrolase family 57 id=3927648 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_166_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

29614..31407
DNA (1794bp) protein (598aa)
malto-oligosyltrehalose trehalohydrolase; K01236 maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Malto-oligosyltrehalose trehalohydrolase id=3927649 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
malto-oligosyltrehalose trehalohydrolase
13_1_40cm_4_scaffold_166_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

31404..32372
DNA (969bp) protein (323aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Aspartate/glutamate/hydantoin racemase (Fragment) id=3927650 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus sp. HPC(L) genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying items 1-30 of 34 in total

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