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13_1_40cm_4_scaffold_1663

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1663_1
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(1..639)
DNA (639bp) protein (213aa)
D-lactate dehydrogenase; K00104 glycolate oxidase [EC:1.1.3.15] Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15) id=14625308 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15)
13_1_40cm_4_scaffold_1663_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1308..2744)
DNA (1437bp) protein (479aa)
malate dehydrogenase; K00027 malate dehydrogenase (oxaloacetate-decarboxylating) [EC:1.1.1.38] Tax=GWA2_Rokubacteria_73_35_curated
malate dehydrogenase (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate decarboxylating) id=3708970 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1663_3
unknown

Not on your lists

comp(2840..3010)
DNA (171bp) protein (57aa)

This feature has no annotations

13_1_40cm_4_scaffold_1663_4
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3224..3583)
DNA (360bp) protein (120aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_4_scaffold_1663_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3874..5049
DNA (1176bp) protein (392aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3708972 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. 2_A_57_CT2 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen decarboxylase (URO-D)
13_1_40cm_4_scaffold_1663_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5160..5528)
DNA (369bp) protein (123aa)
RNP-1 like RNA-binding protein id=3708973 bin=GWA2_Methylomirabilis_73_35 species=ACD40 genus=ACD40 taxon_order=ACD40 taxon_class=ACD40 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative RNA-binding protein RbpA Tax=GWA2_Rokubacteria_73_35_curated
putative RNA-binding protein RbpA
13_1_40cm_4_scaffold_1663_7
unknown

Not on your lists

5945..6766
DNA (822bp) protein (274aa)

This feature has no annotations

13_1_40cm_4_scaffold_1663_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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6867..7310
DNA (444bp) protein (148aa)
id=14625340 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_1663_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7555..8907)
DNA (1353bp) protein (451aa)
two component sigma54 specific Fis family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator; K02481 two-component system, NtrC family, response regulator id=14625085 bin=bin7_NC10_sister species=Carboxydothermus hydrogenoformans genus=Carboxydothermus taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator
13_1_40cm_4_scaffold_1663_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8904..11933)
DNA (3030bp) protein (1010aa)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multi-sensor hybrid histidine kinase id=14625086 bin=bin7_NC10_sister species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_1663_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11930..13522)
DNA (1593bp) protein (531aa)
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acyl-D-amino-acid deacylase; K06015 N-acyl-D-amino-acid deacylase [EC:3.5.1.81] id=14625087 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
13_1_40cm_4_scaffold_1663_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13526..14830)
DNA (1305bp) protein (435aa)
Amidase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Amidase id=5037265 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Amidase
13_1_40cm_4_scaffold_1663_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14892..16685)
DNA (1794bp) protein (598aa)
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase; K00547 homocysteine S-methyltransferase [EC:2.1.1.10] Tax=GWA2_Rokubacteria_70_23_curated
Methylenetetrahydrofolate reductase id=4884112 bin=GWC2_Methylomirabilis_70_24 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase
13_1_40cm_4_scaffold_1663_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16669..17193)
DNA (525bp) protein (175aa)
shikimate dehydrogenase (EC:1.1.1.25) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aroK; shikimate kinase (EC:2.7.1.71)
Shikimate kinase id=4780140 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1663_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17335..18375)
DNA (1041bp) protein (347aa)
Putative uncharacterized protein id=3132984 bin=GWF2_Methylomirabilis_70_14 species=Geitlerinema sp. PCC 7407 genus=Geitlerinema taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_1663_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18372..19562)
DNA (1191bp) protein (397aa)
Formyl-CoA transferase (EC:2.8.3.16)
protein C7orf10 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
L-carnitine dehydratase/bile acid-inducible protein F id=4712288 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1663_17
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(19559..20287)
DNA (729bp) protein (243aa)
echA8_3; enoyl-CoA dehydratase EchA8_3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Enoyl-CoA dehydratase EchA8_3 id=4547814 bin=GWC2_Methylomirabilis_70_24 species=Mycobacterium sp. genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_4_scaffold_1663_18
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20368..20553)
DNA (186bp) protein (62aa)
glycogen debranching protein GlgX (EC:3.2.1.68)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=314279 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ch
Isoamylase n=2 Tax=Nitrosococcus oceani RepID=Q3JAD4_NITOC
13_1_40cm_4_scaffold_1663_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20921..21577)
DNA (657bp) protein (219aa)
vitamin B12 dependent methionine synthase Tax=GWA2_Rokubacteria_73_35_curated
Vitamin B12 dependent methionine synthase id=4780179 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Vitamin B12 dependent methionine synthase activation region
13_1_40cm_4_scaffold_1663_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21622..22635)
DNA (1014bp) protein (338aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Homocysteine S-methyltransferase id=4780181 bin=GWA2_Methylomirabilis_73_35 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
5-methyltetrahydrofolate--homocysteine methyltransferase
13_1_40cm_4_scaffold_1663_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22632..23294)
DNA (663bp) protein (221aa)
methyltransferase cognate corrinoid protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
methyltransferase cognate corrinoid protein id=14625094 bin=bin7_NC10_sister species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
methyltransferase cognate corrinoid protein
13_1_40cm_4_scaffold_1663_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23333..25402)
DNA (2070bp) protein (690aa)
Putative transmembrane sensor domain protein id=2227968 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
guanylate cyclase Tax=GWA2_Rokubacteria_73_35_curated
guanylate cyclase
13_1_40cm_4_scaffold_1663_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

25454..26206
DNA (753bp) protein (251aa)
putative beta-lactamase-like protein Tax=GWA2_Rokubacteria_73_35_curated
Putative beta-lactamase-like protein id=4780187 bin=GWA2_Methylomirabilis_73_35 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-lactamase
13_1_40cm_4_scaffold_1663_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26331..27368)
DNA (1038bp) protein (346aa)
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter-like protein; K02052 putative spermidine/putrescine transport system ATP-binding protein id=14625100 bin=bin7_NC10_sister species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter related
13_1_40cm_4_scaffold_1663_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(27456..28577)
DNA (1122bp) protein (374aa)
major facilitator transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
major facilitator superfamily transporter id=14625101 bin=bin7_NC10_sister species=Advenella kashmirensis genus=Advenella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_4_scaffold_1663_26
unknown

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29027..29125
DNA (99bp) protein (33aa)

This feature has no annotations

13_1_40cm_4_scaffold_1663_27
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29318..29707)
DNA (390bp) protein (130aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
13_1_40cm_4_scaffold_1663_28
unknown

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30012..30101
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying 28 items

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