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13_1_40cm_4_scaffold_1726

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_1726_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(514..813)
DNA (300bp) protein (100aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4039893 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
cell division protein ZapA
13_1_40cm_4_scaffold_1726_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(830..1039)
DNA (210bp) protein (70aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_1726_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(1014..3530)
DNA (2517bp) protein (839aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=14627866 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
phenylalanyl-tRNA synthetase subunit beta
13_1_40cm_4_scaffold_1726_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(3826..4845)
DNA (1020bp) protein (340aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=14627867 bin=bin7_NC10_sister species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
13_1_40cm_4_scaffold_1726_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(4997..5353)
DNA (357bp) protein (119aa)
rplT; 50S ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L20 id=3919662 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosomal protein L20
13_1_40cm_4_scaffold_1726_6
unknown

Not on your lists

comp(5368..5541)
DNA (174bp) protein (58aa)

This feature has no annotations

13_1_40cm_4_scaffold_1726_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5561..6031)
DNA (471bp) protein (157aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-3 id=3919664 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-3
13_1_40cm_4_scaffold_1726_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6125..7420)
DNA (1296bp) protein (432aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWC2_Rokubacteria_70_16_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase id=4178158 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_1726_trna_1
unknown

Not on your lists

comp(7942..8013)
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_1726_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8087..9049)
DNA (963bp) protein (321aa)
OmpA/MotB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TonB family protein id=4825345 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_1726_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9078..10094)
DNA (1017bp) protein (339aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) id=14628036 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54)
13_1_40cm_4_scaffold_1726_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10091..11110)
DNA (1020bp) protein (340aa)
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) id=14628036 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) Tax=CSP1_6_Rokubacte
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54)
13_1_40cm_4_scaffold_1726_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11311..11991)
DNA (681bp) protein (227aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3779673 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_1726_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12042..12881)
DNA (840bp) protein (280aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=14625475 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
amidase
13_1_40cm_4_scaffold_1726_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13261..14811
DNA (1551bp) protein (517aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1726_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14858..16084)
DNA (1227bp) protein (409aa)
cyclic nucleotide-binding protein Tax=GWA2_Rokubacteria_73_35_curated
cyclic nucleotide-binding protein id=14625478 bin=bin7_NC10_sister species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
cyclic nucleotide-binding protein
13_1_40cm_4_scaffold_1726_16
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16081..16581)
DNA (501bp) protein (167aa)
Crp/Fnr family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Crp/Fnr family transcriptional regulator id=14625479 bin=bin7_NC10_sister species=Nocardioides sp. CF8 genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
cyclic nucleotide-binding domain-containing protein
13_1_40cm_4_scaffold_1726_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16597..16830)
DNA (234bp) protein (78aa)
hypothetical protein id=3779689 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1726_18
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

Not on your lists

comp(16888..17682)
DNA (795bp) protein (265aa)
OmpA/MotB domain-containing protein; K02557 chemotaxis protein MotB Tax=RBG_19FT_COMBO_Nitrospirae_42_15_curated
OmpA/MotB domain protein id=3338598 bin=GWC2_Deltaproteobacteria_42_51 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
13_1_40cm_4_scaffold_1726_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18110..19936)
DNA (1827bp) protein (609aa)
amino acid permease-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amino acid permease-associated region id=4193626 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
amino acid permease-associated protein
13_1_40cm_4_scaffold_1726_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20084..20380
DNA (297bp) protein (99aa)
hypothetical protein id=3779761 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_1726_21
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

20466..21902
DNA (1437bp) protein (479aa)
kdpD; sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation (EC:2.7.1.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidat
Sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MJR3_9BACT
13_1_40cm_4_scaffold_1726_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21895..22587
DNA (693bp) protein (231aa)
kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) id=3779763 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
kdpE; response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family)
13_1_40cm_4_scaffold_1726_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22566..22793)
DNA (228bp) protein (76aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_1726_24
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

23050..23301
DNA (252bp) protein (84aa)
id=2868268 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=2868268 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Protein of unknown function (DUF1344)
13_1_40cm_4_scaffold_1726_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(23351..24076)
DNA (726bp) protein (242aa)
Peptidase S1 and S6, chymotrypsin/Hap id=4062227 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
peptidase S1 and S6, chymotrypsin/Hap Tax=GWA2_Rokubacteria_70_23_curated
putative lipoprotein
13_1_40cm_4_scaffold_1726_26
Geomicrobium sp. JCM 19038, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24202..24444
DNA (243bp) protein (81aa)
Binding-protein-dependent transporters inner membrane component n=1 Tax=Brevibacillus borstelensis AK1 RepID=M8DHU3_9BACL
Dipeptide transport system permease protein DppB {ECO:0000313|EMBL:GAK07747.1}; TaxID=1460635 species="Bacteria; Firmicutes; Bacilli; Bacillales; Geomicrobium.;" source="Geomicrobium sp. JCM 19038.;"
oligopeptide transport system permease AppB
13_1_40cm_4_scaffold_1726_27
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24647..25789
DNA (1143bp) protein (381aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002ED2137
vitamin-B12 independent methionine synthase
13_1_40cm_4_scaffold_1726_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25828..26931)
DNA (1104bp) protein (368aa)
Amidase (EC:3.5.1.4); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWA2_Rokubacteria_73_35_curated
Amidase (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A id=4793452 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_1726_29
unknown

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comp(27608..28210)
DNA (603bp) protein (201aa)

This feature has no annotations

Displaying 30 items

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