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13_1_40cm_4_scaffold_2928

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2928_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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190..1476
DNA (1287bp) protein (429aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
13_1_40cm_4_scaffold_2928_2
unknown

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comp(1652..2938)
DNA (1287bp) protein (429aa)

This feature has no annotations

13_1_40cm_4_scaffold_2928_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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3460..3972
DNA (513bp) protein (171aa)
Putative uncharacterized protein id=2937124 bin=GWC2_Methylomirabilis_70_16 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_2928_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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3997..4572
DNA (576bp) protein (192aa)
hypothetical protein id=14626899 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_2928_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4598..5875
DNA (1278bp) protein (426aa)
histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] id=14626900 bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
histidyl-tRNA synthetase
13_1_40cm_4_scaffold_2928_6
Alistipes putredinis CAG:67, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5683..6684)
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Burkholderia pseudomallei RepID=UPI0001631E11
Uncharacterized protein {ECO:0000313|EMBL:CDE64796.1}; TaxID=1263036 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes
hypothetical protein
13_1_40cm_4_scaffold_2928_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6931..7644
DNA (714bp) protein (238aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aspS; Aspartyl-tRNA synthetase / asparaginyl-tRNA synthetase (Aspartate-/asparagine-tRNA ligase) (AspRS) (EC:6.1.1.22 6.1.1.12)
Aspartate--tRNA ligase id=5009801 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2928_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7641..8342
DNA (702bp) protein (234aa)
phoL; phoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PhoH family protein; K06217 phosphate starvation-inducible protein PhoH and related proteins id=14626902 bin=bin7_NC10_sister species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
PhoH family protein
13_1_40cm_4_scaffold_2928_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8339..8599
DNA (261bp) protein (87aa)
phoL; phoH-like protein; K06217 phosphate starvation-inducible protein PhoH and related proteins Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative phosphate starvation-inducible protein, PhoH-like protein id=5009800 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phoL; phoH-like protein
13_1_40cm_4_scaffold_2928_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8599..9063
DNA (465bp) protein (155aa)
metalloprotease ybeY; K07042 probable rRNA maturation factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable rRNA maturation factor id=5009799 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2928_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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9165..10040
DNA (876bp) protein (292aa)
era; GTP-binding protein Era; K03595 GTP-binding protein Era Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
era; GTP-binding protein Era; K03595 GTP-binding protein Era id=14626904 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
era; GTPase Era
13_1_40cm_4_scaffold_2928_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10042..10830
DNA (789bp) protein (263aa)
DNA repair protein RecO id=4265702 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA replication and repair protein RecO; K03584 DNA repair protein RecO (recombination protein O) Tax=GWA2_Rokubacteria_73_35_curated
DNA repair protein recO (Recombination protein O)
13_1_40cm_4_scaffold_2928_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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10827..12305
DNA (1479bp) protein (493aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycine--tRNA ligase id=4265704 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycyl-tRNA synthetase
13_1_40cm_4_scaffold_2928_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12319..14532)
DNA (2214bp) protein (738aa)
Multimodular transpeptidase-transglycosylase Tax=GWA2_Rokubacteria_73_35_curated
Multimodular transpeptidase-transglycosylase id=4265707 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Multimodular transpeptidase-transglycosylase
13_1_40cm_4_scaffold_2928_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14647..15921
DNA (1275bp) protein (425aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1) Tax=GWA2_Rokubacteria_73_35_curated
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Paenibacillus sp. P22 RepID=T2LXK9_9BACL
Displaying 15 items

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