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13_1_40cm_4_scaffold_3008

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3008_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1..1371
DNA (1371bp) protein (457aa)
ribonucleoside-diphosphate reductase (EC:1.17.4.1) Tax=GWA2_Rokubacteria_73_35_curated
ribonucleoside-diphosphate reductase (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase id=4411501 bin=GWC2_Methylomirabilis_70_24 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_3008_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1473..1766
DNA (294bp) protein (98aa)
id=4810598 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
id=4810598 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_3008_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1904..3283
DNA (1380bp) protein (460aa)
MFS transporter xanthine/uracil permease id=2720738 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MFS transporter xanthine/uracil permease; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease Tax=GWA2_Rokubacteria_73_35_curated
MFS transporter xanthine/uracil permease
13_1_40cm_4_scaffold_3008_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3325..3759
DNA (435bp) protein (145aa)
CBS domain containing protein id=4040235 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_3008_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3756..5159
DNA (1404bp) protein (468aa)
ferredoxin-NADP reductase; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ferredoxin--NADP(+) reductase id=4040236 bin=GWA2_Methylomirabilis_73_35 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferredoxin-NADP reductase
13_1_40cm_4_scaffold_3008_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5247..5648
DNA (402bp) protein (134aa)
cytochrome c family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cytochrome c class I id=2720737 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c class I
13_1_40cm_4_scaffold_3008_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5740..6678
DNA (939bp) protein (313aa)
Exopolyphosphatase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Exopolyphosphatase id=2720736 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Exopolyphosphatase
13_1_40cm_4_scaffold_3008_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6701..7630
DNA (930bp) protein (310aa)
proline dehydrogenase; K00318 proline dehydrogenase [EC:1.5.99.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Proline dehydrogenase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SV36_9BACT
proline dehydrogenase
13_1_40cm_4_scaffold_3008_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7683..8213
DNA (531bp) protein (177aa)
HNH endonuclease Tax=GWA2_Rokubacteria_73_35_curated
HNH endonuclease id=4411495 bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
HNH endonuclease
13_1_40cm_4_scaffold_3008_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8299..10242
DNA (1944bp) protein (648aa)
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B id=14625778 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
excinuclease ABC, B subunit
13_1_40cm_4_scaffold_3008_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10281..12176
DNA (1896bp) protein (632aa)
UvrABC system protein C id=2720733 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=GWA2_Rokubacteria_73_35_curated
uvrC; excinuclease ABC subunit C
13_1_40cm_4_scaffold_3008_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

12173..12436
DNA (264bp) protein (88aa)
id=14625776 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14625776 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_3008_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13144..13692
DNA (549bp) protein (183aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Leucine--tRNA ligase id=2720731 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
leuS; leucyl-tRNA synthetase
13_1_40cm_4_scaffold_3008_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13689..14129
DNA (441bp) protein (147aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
leucyl-tRNA synthetase (EC:6.1.1.9)
Leucine--tRNA ligase id=2720731 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 14 items

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