ggKbase home page

13_1_40cm_4_scaffold_3116

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3116_1
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

3..542
DNA (540bp) protein (180aa)
Putative PAS/PAC sensor protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYP8_9CHLR
Putative PAS/PAC sensor protein {ECO:0000313|EMBL:EFH89321.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobact
putative PAS/PAC sensor protein
13_1_40cm_4_scaffold_3116_2
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

562..1701
DNA (1140bp) protein (380aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Kte
Histidine kinase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TIR3_9CHLR
putative sensor histidine kinase
13_1_40cm_4_scaffold_3116_3
Geitlerinema sp. PCC 7407, Geitlerinema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

1698..4577
DNA (2880bp) protein (960aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.13.3)
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:AFY65916.1}; EC=2.7.13.3 {ECO:0000313|EMBL:AFY65916.1};; Flags: Precursor;; TaxID=1173025 species="Bacteria; Cyanobacteria; Oscillatoriophycide
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Geitlerinema sp. PCC 7407 RepID=K9S7I1_9CYAN
13_1_40cm_4_scaffold_3116_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4577..5293
DNA (717bp) protein (239aa)
Diguanylate cyclase (GGDEF) domain-containing protein id=4348887 bin=GWF2_Methylomirabilis_70_14 species=Desulfovibrio sp. U5L genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver modulated diguanylate cyclase/phosphodiesterase Tax=GWA2_Rokubacteria_70_23_curated
response regulator receiver modulated diguanylate cyclase
13_1_40cm_4_scaffold_3116_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5320..5595)
DNA (276bp) protein (92aa)
hypothetical protein; K04100 protocatechuate 4,5-dioxygenase, alpha chain [EC:1.13.11.8]
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_3116_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5621..6406)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3R593_RALPI
putative dioxygenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
13_1_40cm_4_scaffold_3116_7
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6406..6891)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00036F7706
acetamidase/formamidase
Uncharacterized protein {ECO:0000313|EMBL:ETX08618.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_40cm_4_scaffold_3116_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7249..7467)
DNA (219bp) protein (73aa)
Selenoprotein id=2589430 bin=GWA2_Methylomirabilis_73_35 species=Roseobacter sp. GAI101 genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
selenoprotein Tax=GWA2_Rokubacteria_73_35_curated
selenoprotein
13_1_40cm_4_scaffold_3116_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7489..7782)
DNA (294bp) protein (98aa)
selenoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Selenoprotein id=3285643 bin=GWC2_Methylomirabilis_70_24 species=Geodermatophilus obscurus genus=Geodermatophilus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
selenoprotein
13_1_40cm_4_scaffold_3116_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7794..8864)
DNA (1071bp) protein (357aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein MkanA1_05815 id=2589429 bin=GWA2_Methylomirabilis_73_35 species=Hyphomonas neptunium genus=Hyphomonas taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiol-disulfide oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_3116_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9097..9771)
DNA (675bp) protein (225aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=3285641 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_4_scaffold_3116_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9884..11293)
DNA (1410bp) protein (470aa)
hypothetical protein; K07161 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Carbon monoxide dehydrogenase E protein id=4602160 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3116_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11296..12204)
DNA (909bp) protein (303aa)
ATPase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4602158 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ATPase
13_1_40cm_4_scaffold_3116_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12323..13195
DNA (873bp) protein (291aa)
isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23 4.1.3.-)
Putative isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase id=2772881 bin=GWA2_Methylomirabilis_73_35 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative isocitrate lyase-family protein, Putative carboxyvinyl-carboxyphosphonate phosphorylmutase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_3116_15
unknown

Not on your lists

13276..13473
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_4_scaffold_3116_16
unknown

Not on your lists

comp(13489..13800)
DNA (312bp) protein (104aa)
signal transduction histidine kinase
13_1_40cm_4_scaffold_3116_17
unknown

Not on your lists

13917..14123
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_3116_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14233..15093)
DNA (861bp) protein (287aa)
hypothetical protein id=14625737 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
Luciferase-like, subgroup
13_1_40cm_4_scaffold_3116_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15229..15648
DNA (420bp) protein (140aa)
Putative F420-dependent enzyme id=4327982 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyridoxamine 5'-phosphate oxidase-like protein Tax=GWA2_Rokubacteria_73_35_curated
pyridoxamine 5'-phosphate oxidase-like protein
13_1_40cm_4_scaffold_3116_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

15688..16563
DNA (876bp) protein (292aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=2773044 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidohydrolase
13_1_40cm_4_scaffold_3116_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16560..16811
DNA (252bp) protein (84aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=2773044 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus mucilaginosus genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal-dependent amidase
13_1_40cm_4_scaffold_3116_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16808..18004
DNA (1197bp) protein (399aa)
Pm20d; peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Amidohydrolase id=3861039 bin=GWC2_Methylomirabilis_70_16 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Pm20d; peptidase M20 domain-containing protein 2 (Aminoacylase 1-like protein 2)
13_1_40cm_4_scaffold_3116_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

18001..18579
DNA (579bp) protein (193aa)
sodC; Cu,Zn superoxide dismutase (SOD), periplasmic (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] id=14626963 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
sodC; Cu,Zn superoxide dismutase (SOD), periplasmic (EC:1.15.1.1); K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] Tax=CSP1_6_Rokubacteria
sodC; Cu,Zn superoxide dismutase (SOD), periplasmic (EC:1.15.1.1)
13_1_40cm_4_scaffold_3116_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18576..19469)
DNA (894bp) protein (298aa)
Uncharacterized protein, possibly involved in aromatic compounds catabolism id=3428359 bin=GWF2_Methylomirabilis_70_14 species=Beggiatoa alba genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_4_scaffold_3116_25
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19496..19699)
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX00824.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
TetR family transcriptional regulator id=3428347 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Rhodococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3116_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20285..21877)
DNA (1593bp) protein (531aa)
putative thymidylate synthase (EC:2.1.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative thymidylate synthase (EC:2.1.1.-)
Thymidylate synthase complementing protein ThyX id=2773055 bin=GWA2_Methylomirabilis_73_35 species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3116_27
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21918..22679)
DNA (762bp) protein (254aa)
Uncharacterized protein {ECO:0000313|EMBL:ETW94856.1}; Flags: Fragment;; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheone
Putative cyclase id=3202117 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cyclase
13_1_40cm_4_scaffold_3116_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22969..23334)
DNA (366bp) protein (122aa)
cupin Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cupin_2 domain containing protein id=2773060 bin=GWA2_Methylomirabilis_73_35 species=Pyrobaculum sp. 1860 genus=Pyrobaculum taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3116_29
RifOxyA12_full_Proteobacteria_58_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23408..24193)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Cystobacter fuscus DSM 2262 RepID=S9PLE4_9DELT
hypothetical protein Tax=RifOxyA12_full_Proteobacteria_58_15_curated
hypothetical protein
13_1_40cm_4_scaffold_3116_30
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

24535..25329
DNA (795bp) protein (265aa)
Luciferase-like, subgroup Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Luciferase family protein id=2817356 bin=GWC2_Methylomirabilis_70_16 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Displaying items 1-30 of 47 in total

View Taxonomy