ggKbase home page

13_1_40cm_4_scaffold_363

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_363_trna_1
unknown

Not on your lists

14..85
DNA (72bp)
transferRNA
13_1_40cm_4_scaffold_363_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1088..3145
DNA (2058bp) protein (686aa)
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit B id=3435283 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_363_2
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3154..4257
DNA (1104bp) protein (368aa)
top6A; DNA topoisomerase VI subunit A (EC:5.99.1.3); K03166 DNA topoisomerase VI subunit A [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
top6A; DNA topoisomerase VI subunit A (EC:5.99.1.3)
Type 2 DNA topoisomerase 6 subunit A n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEY5_9BACT
13_1_40cm_4_scaffold_363_3
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

4622..5020
DNA (399bp) protein (133aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
13_1_40cm_4_scaffold_363_4
unknown

Not on your lists

comp(5198..5539)
DNA (342bp) protein (114aa)

This feature has no annotations

13_1_40cm_4_scaffold_363_5
unknown

Not on your lists

comp(5586..6032)
DNA (447bp) protein (149aa)

This feature has no annotations

13_1_40cm_4_scaffold_363_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6598..6999)
DNA (402bp) protein (134aa)
id=14628004 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_363_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7245..9248
DNA (2004bp) protein (668aa)
TPR repeats containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TPR repeat-containing protein id=4170660 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_363_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9235..10026)
DNA (792bp) protein (264aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4170661 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_363_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10095..10781
DNA (687bp) protein (229aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=4170662 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_363_10
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

10867..11064
DNA (198bp) protein (66aa)
response regulator receiver protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=4170663 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_363_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11068..11895
DNA (828bp) protein (276aa)
cytidylate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3773171 bin=GWC2_Methylomirabilis_70_24 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
transport-associated protein
13_1_40cm_4_scaffold_363_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12028..13200)
DNA (1173bp) protein (391aa)
protease Do (EC:3.4.21.108) Tax=GWA2_Rokubacteria_73_35_curated
protease Do (EC:3.4.21.107)
Protease Do id=4205762 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_363_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13346..14983
DNA (1638bp) protein (546aa)
polysaccharide biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Polysaccharide biosynthesis protein id=4205765 bin=GWA2_Methylomirabilis_73_35 species=Dictyoglomus thermophilum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polysaccharide biosynthesis protein
13_1_40cm_4_scaffold_363_14
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

14986..15792
DNA (807bp) protein (269aa)
AAA ATPase; K02450 general secretion pathway protein A Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
ATPase id=14627844 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Marinimicrobia tax=bin7_NC10_sister organism_group=NC10
AAA ATPase
13_1_40cm_4_scaffold_363_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15792..16967
DNA (1176bp) protein (392aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4205768 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_363_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17026..20445
DNA (3420bp) protein (1140aa)
capsular polysaccharide biosynthesis protein (EC:2.7.10.2)
capsular polysaccharide biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
exopolysaccharide biosynthesis protein id=14627847 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_363_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

20476..21876
DNA (1401bp) protein (467aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14628091 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_363_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21873..22277
DNA (405bp) protein (135aa)
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC:3.1.3.45); K03270 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DEJ1_9GAMM
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
Displaying 19 items

View Taxonomy