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13_1_40cm_4_scaffold_3772

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3772_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3..605)
DNA (603bp) protein (201aa)
acetamidase/formamidase id=14627591 bin=bin7_NC10_sister species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
acetamidase/formamidase Tax=CSP1_6_Rokubacteria
acetamidase/formamidase
13_1_40cm_4_scaffold_3772_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

735..1337
DNA (603bp) protein (201aa)
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
isochorismatase hydrolase; K08281 nicotinamidase/pyrazinamidase [EC:3.5.1.19 3.5.1.-] id=14627128 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
nicotinamidase
13_1_40cm_4_scaffold_3772_3
CG_Arma_02, Armatimonadetes, Bacteria

Not on your lists

1306..2514
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6DABF
hypothetical protein Tax=CG_Arma_02
hypothetical protein
13_1_40cm_4_scaffold_3772_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2520..3104
DNA (585bp) protein (195aa)
type 11 methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 11 id=1884749 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
type 11 methyltransferase
13_1_40cm_4_scaffold_3772_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3123..4112
DNA (990bp) protein (330aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=1884751 bin=GWA2_Methylomirabilis_73_35 species=Methanoculleus marisnigri genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_3772_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4217..4885)
DNA (669bp) protein (223aa)
Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 ChkSERCA3 SERCA3 Calcium pump 3 SR Ca(2+)-ATPase 3 {ECO:0000313|EMBL:CCE96374.1}; EC=3.6.3.8 {ECO:0000313|EMBL:CCE96374.1};; TaxID=1117943 species="
Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 ChkSERCA3 SERCA3 Calcium pump 3 SR Ca(2+)-ATPase 3 n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A7Z4_RHIFH
Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 ChkSERCA3; SERCA3; Calcium pump 3; SR Ca(2+)-ATPase 3
13_1_40cm_4_scaffold_3772_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

4932..5384
DNA (453bp) protein (151aa)
hypothetical protein id=14428953 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
rare lipoprotein A
13_1_40cm_4_scaffold_3772_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5386..6486)
DNA (1101bp) protein (367aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=1884755 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase
13_1_40cm_4_scaffold_3772_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6500..7090
DNA (591bp) protein (197aa)
membrane-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SNARE associated Golgi protein-like protein id=2913053 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
membrane-associated protein
13_1_40cm_4_scaffold_3772_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7277..8632
DNA (1356bp) protein (452aa)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integral membrane sensor signal transduction histidine kinase id=1884757 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_1_40cm_4_scaffold_3772_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8625..10016
DNA (1392bp) protein (464aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1884909 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=GWA2_Rokubacteria_73_35_curated
zraR7; sigma-54 dependent DNA-binding response regulator
13_1_40cm_4_scaffold_3772_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(10030..10329)
DNA (300bp) protein (100aa)
hypothetical protein id=14430015 bin=bin3_NC10 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein
13_1_40cm_4_scaffold_3772_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(10346..10561)
DNA (216bp) protein (72aa)
putative outer membrane protein id=14430016 bin=bin3_NC10 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
putative outer membrane protein Tax=CSP1_5_NC10
outer membrane protein
13_1_40cm_4_scaffold_3772_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10653..11129)
DNA (477bp) protein (159aa)
intradiol ring-cleavage dioxygenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
intradiol ring-cleavage dioxygenase id=14625204 bin=bin7_NC10_sister species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
intradiol ring-cleavage dioxygenase
13_1_40cm_4_scaffold_3772_15
unknown

Not on your lists

11132..12007
DNA (876bp) protein (292aa)

This feature has no annotations

13_1_40cm_4_scaffold_3772_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12022..12297
DNA (276bp) protein (92aa)
Glycogen synthase id=1884913 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycogen synthase Tax=GWA2_Rokubacteria_73_35_curated
glycogen synthase
13_1_40cm_4_scaffold_3772_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12302..13024
DNA (723bp) protein (241aa)
Probable phosphotransferase id=1884917 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphotransferase Tax=GWA2_Rokubacteria_73_35_curated
HAD-superfamily hydrolase
13_1_40cm_4_scaffold_3772_18
Geobacter lovleyi, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13062..13382
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E982_GEOLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD96795.1}; Flags: Precursor;; TaxID=398767 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="
13_1_40cm_4_scaffold_3772_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13467..14312)
DNA (846bp) protein (282aa)
Iron permease FTR1 n=1 Tax=uncultured prokaryote RepID=H5SCN3_9ZZZZ
iron permease FTR1; K07243 high-affinity iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron permease FTR1
13_1_40cm_4_scaffold_3772_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14316..14663)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0G3_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_3772_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14832..17174)
DNA (2343bp) protein (781aa)
putative penicillin-binding protein 1B (EC:2.4.1.129 3.4.-.-); K05365 penicillin-binding protein 1B [EC:2.4.1.129 3.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Penicillin-binding protein, 1A family id=3640482 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
1A family penicillin-binding protein
13_1_40cm_4_scaffold_3772_22
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17206..17406)
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX09182.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_40cm_4_scaffold_3772_23
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17631..18833)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AKH5_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAR35357.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurred
13_1_40cm_4_scaffold_3772_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(18913..19275)
DNA (363bp) protein (121aa)
signal transduction histidine kinase id=14627691 bin=bin7_NC10_sister species=Desulfovibrio longus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase Tax=CSP1_6_Rokubacteria
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_4_scaffold_3772_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

19482..20513
DNA (1032bp) protein (344aa)
two component, sigma54 specific, Fis family transcriptional regulator id=14627680 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator Tax=CSP1_6_Rokubacteria
two component sigma-54 specific Fis family transcriptional regulator
13_1_40cm_4_scaffold_3772_26
unknown

Not on your lists

comp(20510..20602)
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_4_scaffold_3772_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20780..21271
DNA (492bp) protein (164aa)
putative twin-arginine translocation protein TatB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=1884921 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. RS9917 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative twin-arginine translocation protein TatB
13_1_40cm_4_scaffold_3772_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21450..22085
DNA (636bp) protein (212aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LexA repressor id=1884925 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_3772_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22160..23920)
DNA (1761bp) protein (587aa)
Metal dependent phosphohydrolase id=1884935 bin=GWA2_Methylomirabilis_73_35 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase Tax=GWA2_Rokubacteria_73_35_curated
metal dependent phosphohydrolase
13_1_40cm_4_scaffold_3772_30
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24062..25651
DNA (1590bp) protein (530aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase id=1884939 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying items 1-30 of 38 in total

View Taxonomy