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13_1_40cm_4_scaffold_3796

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_3796_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3..452)
DNA (450bp) protein (150aa)
translation elongation factor 1A (EF-1A/EF-Tu); K02358 elongation factor Tu id=14625511 bin=bin7_NC10_sister species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
translation elongation factor 1A (EF-1A/EF-Tu); K02358 elongation factor Tu Tax=CSP1_6_Rokubacteria
translation elongation factor 1A (EF-1A/EF-Tu)
13_1_40cm_4_scaffold_3796_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(726..2837)
DNA (2112bp) protein (704aa)
fusA-3; elongation factor G; K02355 elongation factor G Tax=GWA2_Rokubacteria_73_35_curated
fusA-3; elongation factor G; K02355 elongation factor G id=14627328 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
translation elongation factor G
13_1_40cm_4_scaffold_3796_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3017..3484)
DNA (468bp) protein (156aa)
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 id=14627329 bin=bin7_NC10_sister species=Photobacterium profundum genus=Photobacterium taxon_order=Vibrionales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
rpsG; 30S ribosomal protein S7
13_1_40cm_4_scaffold_3796_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3490..3651)
DNA (162bp) protein (54aa)
30S ribosomal protein S12 n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00035D166E
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpsL; 30S ribosomal protein S12
13_1_40cm_4_scaffold_3796_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3894..8075)
DNA (4182bp) protein (1394aa)
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6) id=14627331 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoC; RNA polymerase, beta prime subunit (EC:2.7.7.6)
13_1_40cm_4_scaffold_3796_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8089..11124)
DNA (3036bp) protein (1012aa)
rpoB; RNA polymerase subunit beta (EC:2.7.7.6) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
rpoB; RNA polymerase subunit beta (EC:2.7.7.6) id=14627332 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpoB; RNA polymerase subunit beta (EC:2.7.7.6)
13_1_40cm_4_scaffold_3796_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11070..12068)
DNA (999bp) protein (333aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA-directed RNA polymerase subunit beta id=3836484 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpoB; DNA-directed RNA polymerase subunit beta
13_1_40cm_4_scaffold_3796_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(12567..13109)
DNA (543bp) protein (181aa)
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10 id=14627334 bin=bin7_NC10_sister species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L10
13_1_40cm_4_scaffold_3796_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(13121..13837)
DNA (717bp) protein (239aa)
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L1 id=3447243 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplA; 50S ribosomal protein L1
13_1_40cm_4_scaffold_3796_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(13912..14331)
DNA (420bp) protein (140aa)
rplK; 50S ribosomal protein L11 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
50S ribosomal protein L11 id=3447240 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
rplK; 50S ribosomal protein L11
13_1_40cm_4_scaffold_3796_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14331..14885)
DNA (555bp) protein (185aa)
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcription antitermination protein nusG id=3836412 bin=GWF2_Methylomirabilis_70_14 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcription antitermination protein nusG
13_1_40cm_4_scaffold_3796_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14882..15073)
DNA (192bp) protein (64aa)
preprotein translocase, SecE subunit Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE id=14627338 bin=bin7_NC10_sister species=Desulfatibacillum alkenivorans genus=Desulfatibacillum taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
preprotein translocase subunit SecE
13_1_40cm_4_scaffold_3796_trna_1
unknown

Not on your lists

comp(15101..15174)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_3796_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(15267..15413)
DNA (147bp) protein (49aa)
rpmG; 50S ribosomal protein L33; K02913 large subunit ribosomal protein L33 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L33 id=3836408 bin=GWF2_Methylomirabilis_70_14 species=Aquifex aeolicus genus=Aquifex taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmG; 50S ribosomal protein L33
Displaying 14 items

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