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13_1_40cm_4_scaffold_381

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_381_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

57..536
DNA (480bp) protein (160aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14627393 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_381_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

548..985
DNA (438bp) protein (146aa)
hypothetical protein id=14627394 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_381_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(990..2426)
DNA (1437bp) protein (479aa)
radical SAM domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Radical SAM domain protein id=2216072 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Acidiphilium taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
radical SAM domain-containing protein
13_1_40cm_4_scaffold_381_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2463..4187)
DNA (1725bp) protein (575aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase id=3955120 bin=GWA2_Methylomirabilis_73_35 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
13_1_40cm_4_scaffold_381_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4190..4561)
DNA (372bp) protein (124aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Membrane protein, putative id=3955119 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
membrane protein
13_1_40cm_4_scaffold_381_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4562..4975)
DNA (414bp) protein (138aa)
id=3870377 Tax=GWA2_Rokubacteria_73_35_curated
id=3870377 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_381_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4998..5660)
DNA (663bp) protein (221aa)
putative ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type antimicrobial peptide transport system, ATPase component id=3955117 bin=GWA2_Methylomirabilis_73_35 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
13_1_40cm_4_scaffold_381_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5668..6588)
DNA (921bp) protein (307aa)
Putative ABC transporter permease protein id=3955116 bin=GWA2_Methylomirabilis_73_35 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_1_40cm_4_scaffold_381_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6935..8206)
DNA (1272bp) protein (424aa)
monooxygenase FAD-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Flavin-dependent dehydrogenase id=2980067 bin=GWC2_Methylomirabilis_70_16 species=Xanthomonas gardneri genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
monooxygenase FAD-binding protein
13_1_40cm_4_scaffold_381_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8203..9318)
DNA (1116bp) protein (372aa)
glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyltransferase involved in cell wall biogenesis id=3870373 bin=GWF2_Methylomirabilis_70_14 species=Granulibacter bethesdensis genus=Granulibacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein
13_1_40cm_4_scaffold_381_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9505..10614)
DNA (1110bp) protein (370aa)
beta-ketoacyl-acyl-carrier-protein synthase II (EC:2.3.1.179); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Beta-ketoacyl synthase id=3870372 bin=GWF2_Methylomirabilis_70_14 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
beta-ketoacyl synthase
13_1_40cm_4_scaffold_381_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10611..11792)
DNA (1182bp) protein (394aa)
Beta-ketoacyl synthase id=3713926 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
beta-ketoacyl synthase Tax=GWC2_Rokubacteria_70_16_curated
Beta-ketoacyl synthase
13_1_40cm_4_scaffold_381_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11789..12064)
DNA (276bp) protein (92aa)
hypothetical protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K02078 acyl carrier protein id=14627962 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_381_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12104..12919)
DNA (816bp) protein (272aa)
beta-ketoacyl synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative 3-oxoacyl-ACP synthase I id=14627961 bin=bin7_NC10_sister species=Streptomyces rapamycinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
beta-ketoacyl synthase
13_1_40cm_4_scaffold_381_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12916..14139)
DNA (1224bp) protein (408aa)
Beta-ketoacyl synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=3713931 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_381_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(14078..15049)
DNA (972bp) protein (324aa)
Lauroyl/myristoyl acyltransferase (EC:2.3.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lipid A biosynthesis acyltransferase id=3713934 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lipid A biosynthesis acyltransferase
13_1_40cm_4_scaffold_381_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15049..15870)
DNA (822bp) protein (274aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=14627958 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_381_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15960..16934
DNA (975bp) protein (325aa)
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] id=14627933 bin=bin7_NC10_sister species=Mycobacterium sp. 155 genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
dihydroorotate dehydrogenase
13_1_40cm_4_scaffold_381_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17302..17496
DNA (195bp) protein (65aa)
id=4430353 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4430353 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_4_scaffold_381_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17505..17957)
DNA (453bp) protein (151aa)
putative glyoxalase; K07104 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative glyoxalase; K07104 id=14627931 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
putative glyoxalase
13_1_40cm_4_scaffold_381_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18063..18731)
DNA (669bp) protein (223aa)
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA repair protein RadC; K03630 DNA repair protein RadC id=14627930 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
DNA repair protein RadC
13_1_40cm_4_scaffold_381_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18831..19256)
DNA (426bp) protein (142aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein family UPF0079, ATPase id=4773673 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_381_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19246..20805)
DNA (1560bp) protein (520aa)
yjeF; carbohydrate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein yjeF id=4773674 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
YjeF-like protein
13_1_40cm_4_scaffold_381_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20811..21545)
DNA (735bp) protein (245aa)
id=4870785 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3047192 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_381_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21825..22037)
DNA (213bp) protein (71aa)
holo-acyl-carrier-protein synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Holo-[acyl-carrier-protein] synthase id=4773676 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
holo-ACP synthase
13_1_40cm_4_scaffold_381_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22034..23386)
DNA (1353bp) protein (451aa)
glmM; phosphoglucosamine mutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phosphoglucosamine mutase id=3047300 bin=GWF2_Methylomirabilis_70_14 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glmM; phosphoglucosamine mutase
13_1_40cm_4_scaffold_381_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23448..24293)
DNA (846bp) protein (282aa)
folP; dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dihydropteroate synthase id=4773680 bin=GWC2_Methylomirabilis_70_16 species=Thermogladius cellulolyticus genus=Thermogladius taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dihydropteroate synthase
13_1_40cm_4_scaffold_381_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24358..26181)
DNA (1824bp) protein (608aa)
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH id=2610206 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_381_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26366..26971)
DNA (606bp) protein (202aa)
Sporulation and cell division repeat protein id=2285129 bin=GWA2_Methylomirabilis_73_35 species=Xanthomonas fragariae genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_381_30
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(26971..28662)
DNA (1692bp) protein (564aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase id=2610199 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying items 1-30 of 96 in total

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