ggKbase home page

13_1_40cm_4_scaffold_4006

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4006_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

312..1073
DNA (762bp) protein (254aa)
Binding-protein-dependent transport systems inner membrane component id=4827662 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative taurine ABC transporter permease protein Tax=GWA2_Rokubacteria_73_35_curated
putative taurine ABC transporter permease protein
13_1_40cm_4_scaffold_4006_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1594..1821
DNA (228bp) protein (76aa)
Taurine transporter subunit ; membrane component of ABC superfamily id=4827663 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative taurine ABC transporter permease protein Tax=GWA2_Rokubacteria_73_35_curated
putative taurine ABC transporter permease protein
13_1_40cm_4_scaffold_4006_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1818..2135
DNA (318bp) protein (106aa)
Uncharacterized protein id=4827664 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_4006_4
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

2135..3073
DNA (939bp) protein (313aa)
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family n=1 Tax=Synechocystis sp. PCC 7509 RepID=L8KQB2_9SYNC
putative TRAP-type C4-dicarboxylate transport system Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
TRAP dicarboxylate transporter, DctP subunit
13_1_40cm_4_scaffold_4006_5
RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3281..4210)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4CF88_DESTA
cytoplasmic protein; K09144 hypothetical protein Tax=RIFOXYD12_FULL_Deltaproteobacteria_50_9_curated
hypothetical protein
13_1_40cm_4_scaffold_4006_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4207..4443)
DNA (237bp) protein (79aa)
Predicted transcriptional regulator n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LU44_SYNAS
putative transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
transcriptional regulator
13_1_40cm_4_scaffold_4006_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(5072..5974)
DNA (903bp) protein (301aa)
alpha/beta hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alpha/beta hydrolase id=14626075 bin=bin7_NC10_sister species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase
13_1_40cm_4_scaffold_4006_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6015..7130)
DNA (1116bp) protein (372aa)
Oxidoreductase domain protein id=4827665 bin=GWA2_Methylomirabilis_73_35 species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_4006_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7159..8196)
DNA (1038bp) protein (346aa)
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative dehydrogenase protein id=4827666 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium CSL12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_4006_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8325..9287
DNA (963bp) protein (321aa)
bug43; hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative secreted protein id=3360382 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
bug43; hypothetical protein
13_1_40cm_4_scaffold_4006_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

9301..9747
DNA (447bp) protein (149aa)
Putative uncharacterized protein id=4827672 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces bingchenggensis genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_4006_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9749..11266
DNA (1518bp) protein (506aa)
hypothetical protein; K07793 putative tricarboxylic transport membrane protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Tricarboxylate transport membrane protein id=3360389 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
transporter
13_1_40cm_4_scaffold_4006_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11363..11902
DNA (540bp) protein (180aa)
aminopeptidase (EC:3.4.13.9); K01271 Xaa-Pro dipeptidase [EC:3.4.13.9] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aminopeptidase (EC:3.4.13.9)
Metallopeptidase family M24 protein id=4827678 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium CSL12 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 13 items

View Taxonomy