ggKbase home page

13_1_40cm_4_scaffold_4207

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_4207_1
RBG_13_WOR_3_43_14_curated, WOR-3, Bacteria

Not on your lists

2..220
DNA (219bp) protein (73aa)
hypothetical protein Tax=RBG_13_WOR_3_43_14_curated
13_1_40cm_4_scaffold_4207_2
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(230..940)
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B6EA42
Uncharacterized protein {ECO:0000313|EMBL:KFN43835.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryzite
hypothetical protein
13_1_40cm_4_scaffold_4207_3
unknown

Not on your lists

1054..1539
DNA (486bp) protein (162aa)

This feature has no annotations

13_1_40cm_4_scaffold_4207_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1526..1984)
DNA (459bp) protein (153aa)
Heavy-metal resistance protein
Heavy-metal resistance protein {ECO:0000313|EMBL:AHG88946.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative uncharacterized protein id=3395047 bin=GWF2_Lentisphaerae_49_21 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
13_1_40cm_4_scaffold_4207_5
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(1981..2328)
DNA (348bp) protein (116aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
13_1_40cm_4_scaffold_4207_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(2328..2840)
DNA (513bp) protein (171aa)
RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
RNA polymerase sigma factor id=3395044 bin=GWF2_Lentisphaerae_49_21 species=Microscilla marina genus=Microscilla taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
13_1_40cm_4_scaffold_4207_7
CG_Micra_04, Micraarchaeota, Archaea

Not on your lists

comp(2908..3480)
DNA (573bp) protein (191aa)
hypothetical protein Tax=CG_Micra_04
Putative uncharacterized protein id=3122155 bin=GWC2_Elusimicrobia_64_44 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_4207_8
unknown

Not on your lists

comp(3477..3674)
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_4_scaffold_4207_9
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(3746..3976)
DNA (231bp) protein (77aa)
hypothetical membrane protein
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
13_1_40cm_4_scaffold_4207_10
unknown

Not on your lists

4093..4212
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_4_scaffold_4207_11
Streptomyces fradiae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4214..4354)
DNA (141bp) protein (47aa)
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
AMP-dependent synthetase n=1 Tax=Streptomyces RepID=UPI000363B27A
AMP-dependent synthetase {ECO:0000313|EMBL:KDS84747.1}; TaxID=1906 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces fradiae (Streptomyces ro
13_1_40cm_4_scaffold_4207_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4297..5784)
DNA (1488bp) protein (496aa)
4-coumarate--CoA ligase (EC:6.2.1.12) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative 4-coumarate-CoA ligase 3 n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0KCQ2_SACES
hypothetical protein
13_1_40cm_4_scaffold_4207_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

5869..6363
DNA (495bp) protein (165aa)
GCN5-related N-acetyltransferase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024E8_SOLUE
N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABJ83628.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacte
13_1_40cm_4_scaffold_4207_14
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(6396..6917)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SGK2_PLABD
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
hypothetical protein
13_1_40cm_4_scaffold_4207_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6976..8520)
DNA (1545bp) protein (515aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase {ECO:0000256|HAMAP-Rule:MF_00407}; EC=6.5.1.1 {ECO:0000256|HAMAP-Rule:MF_00407};; Polydeoxyribonucleotide synthase [ATP] {ECO:0000256|HAMAP-Rule:MF_00407}; TaxID=1254432 species="B
Probable DNA ligase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y6Z4_SORCE
13_1_40cm_4_scaffold_4207_16
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

8589..9197
DNA (609bp) protein (203aa)
msrA; peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QEN7_9CYAN
13_1_40cm_4_scaffold_4207_17
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

9219..9731
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GE09_9BACT
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
protein of unknown function DUF664
13_1_40cm_4_scaffold_4207_18
unknown

Not on your lists

comp(9773..10267)
DNA (495bp) protein (165aa)

This feature has no annotations

13_1_40cm_4_scaffold_4207_19
unknown

Not on your lists

comp(10236..10646)
DNA (411bp) protein (137aa)

This feature has no annotations

13_1_40cm_4_scaffold_4207_20
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(10709..11221)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADU5_GEMAT
DinB-like domain protein
DinB-like domain protein {ECO:0000313|EMBL:AHG88227.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_4207_21
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11381..13588)
DNA (2208bp) protein (736aa)
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG92755.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Serine/threonine protein kinase id=1250165 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
13_1_40cm_4_scaffold_4207_22
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13610..15460)
DNA (1851bp) protein (617aa)
Uncharacterized protein n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CGQ2_ALCDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFT70761.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dies
Displaying 22 items

View Taxonomy