ggKbase home page

13_1_40cm_4_scaffold_548

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_548_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..766)
DNA (765bp) protein (255aa)
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
dnaN; DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] id=14625298 bin=bin7_NC10_sister species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
13_1_40cm_4_scaffold_548_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(931..2196)
DNA (1266bp) protein (422aa)
dnaA; chromosomal replication initiator protein dnaA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dnaA; chromosomal replication initiator protein dnaA id=14625297 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
dnaA; chromosomal replication initiator protein dnaA
13_1_40cm_4_scaffold_548_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2503..2991
DNA (489bp) protein (163aa)
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5] Tax=GWA2_Rokubacteria_73_35_curated
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5] id=14625295 bin=bin7_NC10_sister species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_548_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3230..4960
DNA (1731bp) protein (577aa)
Membrane protein insertase YidC id=2324956 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio magneticus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxaA; inner membrane protein OxaA; K03217 preprotein translocase subunit YidC Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_548_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5112..5642
DNA (531bp) protein (177aa)
glucose inhibited division protein; K03501 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] Tax=GWA2_Rokubacteria_73_35_curated
Ribosomal RNA small subunit methyltransferase G id=2324957 bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio aespoeensis genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glucose inhibited division protein
13_1_40cm_4_scaffold_548_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5945..6667
DNA (723bp) protein (241aa)
chromosome partitioning ATPase Soj; K03496 chromosome partitioning protein Tax=GWA2_Rokubacteria_73_35_curated
Chromosome partitioning ATPase Soj id=2324958 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_548_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6660..7496
DNA (837bp) protein (279aa)
ParB-like nuclease domain-containing protein; K03497 chromosome partitioning protein, ParB family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Chromosome segregation DNA-binding protein id=2324959 bin=GWA2_Methylomirabilis_73_35 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ParB-like nuclease domain-containing protein
13_1_40cm_4_scaffold_548_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7501..8583
DNA (1083bp) protein (361aa)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
tRNA-specific 2-thiouridylase MnmA id=2324960 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trmU; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase
13_1_40cm_4_scaffold_548_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8688..9272
DNA (585bp) protein (195aa)
Sodium-transporting two-sector ATPase (EC:3.6.3.15) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sodium-transporting two-sector ATPase (EC:3.6.3.15)
ATP synthase subunit b id=2324961 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_548_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9269..9817
DNA (549bp) protein (183aa)
F0F1 ATP synthase subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ATP synthase delta chain (EC:3.6.3.14)
ATP synthase subunit delta id=2324962 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_548_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9846..11372
DNA (1527bp) protein (509aa)
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14) id=14625286 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
atpA; ATP synthase subunit alpha, membrane-bound, F1 sector (EC:3.6.3.14)
13_1_40cm_4_scaffold_548_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11373..12251
DNA (879bp) protein (293aa)
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase gamma chain id=2324964 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_548_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

12248..13669
DNA (1422bp) protein (474aa)
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
atpD; ATP synthase subunit beta, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase subunit beta id=3212391 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_548_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13670..14080
DNA (411bp) protein (137aa)
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14) Tax=GWA2_Rokubacteria_73_35_curated
atpC; ATP synthase subunit epsilon, membrane-bound, F1 sector (EC:3.6.3.14)
ATP synthase epsilon chain id=3299513 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_548_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14210..14596
DNA (387bp) protein (129aa)
Two component transcriptional regulator, winged helix family id=3299511 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Transcriptional regulatory protein yycF Tax=GWA2_Rokubacteria_73_35_curated
OmpR; response regulator
13_1_40cm_4_scaffold_548_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14581..15270
DNA (690bp) protein (230aa)
PAS/PAC sensor-containing diguanylate cyclase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Diguanylate cyclase with PAS/PAC sensor id=3299509 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_548_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15257..16084
DNA (828bp) protein (276aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3299507 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_548_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16086..17669
DNA (1584bp) protein (528aa)
integral membrane sensor signal transduction histidine kinase; K11357 two-component system, cell cycle sensor histidine kinase DivJ [EC:2.7.13.3] Tax=GWA2_Rokubacteria_73_35_curated
Integral membrane sensor signal transduction histidine kinase id=3299505 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phoR4; alkaline phosphatase synthesis sensor protein
13_1_40cm_4_scaffold_548_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17651..17899
DNA (249bp) protein (83aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3299399 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_548_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17899..18174
DNA (276bp) protein (92aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625277 bin=bin7_NC10_sister species=Nitrospina sp. SCGC AAA288-L16 genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_548_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18171..18746
DNA (576bp) protein (192aa)
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-polyprenyl-4-hydroxybenzoate decarboxylase id=2319271 bin=GWA2_Methylomirabilis_73_35 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX
13_1_40cm_4_scaffold_548_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18759..19505
DNA (747bp) protein (249aa)
Glycosyltransferase id=2319272 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 2 glycosyl transferase Tax=GWA2_Rokubacteria_73_35_curated
family 2 glycosyl transferase
13_1_40cm_4_scaffold_548_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19502..20491
DNA (990bp) protein (330aa)
oxidoreductase domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase domain protein id=2319273 bin=GWA2_Methylomirabilis_73_35 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase domain-containing protein
13_1_40cm_4_scaffold_548_24
unknown

Not on your lists

20890..21024
DNA (135bp) protein (45aa)

This feature has no annotations

13_1_40cm_4_scaffold_548_trna_3
unknown

Not on your lists

comp(21139..21222)
DNA (84bp)
transferRNA
13_1_40cm_4_scaffold_548_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21255..21689
DNA (435bp) protein (145aa)
smpB; SsrA-binding protein; K03664 SsrA-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
SsrA-binding protein id=4214930 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
smpB; SsrA-binding protein
13_1_40cm_4_scaffold_548_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

22174..22848
DNA (675bp) protein (225aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XH21_9BACT
Haloacid dehalogenase superfamily enzyme, subfamily IA {ECO:0000313|EMBL:CDM64161.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas met
HAD-superfamily hydrolase
13_1_40cm_4_scaffold_548_27
RBG_16_Gamma2_64_11_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23095..23472
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI000370657D
hypothetical protein Tax=RBG_16_Gamma2_64_11_curated
hypothetical protein
13_1_40cm_4_scaffold_548_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23713..25134
DNA (1422bp) protein (474aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) id=14625267 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
13_1_40cm_4_scaffold_548_29
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25141..25872
DNA (732bp) protein (244aa)
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribonuclease PH id=4994649 bin=GWA2_Methylomirabilis_73_35 species=Desulfitobacterium metallireducens genus=Desulfitobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribonuclease PH
Displaying items 1-30 of 38 in total

View Taxonomy