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13_1_40cm_4_scaffold_5800

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_5800_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

254..550
DNA (297bp) protein (99aa)
Gas vesicle structural protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=GVPA_KORVE
gas vesicle protein GVPa Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
Gas vesicle structural protein
13_1_40cm_4_scaffold_5800_2
Leptospirillum ferrodiazotrophum, Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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1063..1374
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I0X6_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EES51495.1}; TaxID=412449 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum ferrodiazotrophum.;
13_1_40cm_4_scaffold_5800_3
Leptospirillum sp. Group II '5-way CG', Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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1380..2411
DNA (1032bp) protein (344aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6APN6_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:EDZ39222.1}; TaxID=419541 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group II '5-way
hypothetical protein
13_1_40cm_4_scaffold_5800_4
Leptospirillum sp. Group II '5-way CG', Leptospirillum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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2401..3234
DNA (834bp) protein (278aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum sp. Group II '5-way CG' RepID=B6APN5_9BACT
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EDZ39221.1}; TaxID=419541 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Leptospirillum.;" source="Leptospirillum sp. Group II '5-way
13_1_40cm_4_scaffold_5800_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3324..4610)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PLZ9_9BRAD
major facilitator superfamily permease Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
major facilitator superfamily permease
13_1_40cm_4_scaffold_5800_6
Methanosarcina sp. 2.H.T.1A.15, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(4764..4952)
DNA (189bp) protein (63aa)
Glucose/sorbosone dehydrogenase-like protein id=4881135 bin=GWC2_Geobacteraceae_55_20 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:KKG28803.1}; TaxID=1483596 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina s
L-sorbosone dehydrogenase
13_1_40cm_4_scaffold_5800_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4949..5926)
DNA (978bp) protein (326aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=2216084 bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
D-isomer specific 2-hydroxyacid dehydrogenase
13_1_40cm_4_scaffold_5800_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5974..6912)
DNA (939bp) protein (313aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWC2_Rokubacteria_70_16_curated
D-isomer specific 2-hydroxyacid dehydrogenase (EC:1.1.1.95)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding id=4849607 bin=GWC2_Methylomirabilis_70_16 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_5800_9
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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7092..7847
DNA (756bp) protein (252aa)
Helix-turn-helix domain protein n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XJW5_9CHRO
Uncharacterized protein {ECO:0000313|EMBL:ETW92329.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
helix-turn-helix domain protein
13_1_40cm_4_scaffold_5800_10
unknown

Not on your lists

comp(7913..8746)
DNA (834bp) protein (278aa)

This feature has no annotations

13_1_40cm_4_scaffold_5800_trna_3
unknown

Not on your lists

comp(8948..9020)
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_5800_trna_2
unknown

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comp(9035..9108)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_5800_trna_1
unknown

Not on your lists

comp(9127..9200)
DNA (74bp)
transferRNA
13_1_40cm_4_scaffold_5800_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9248..10129)
DNA (882bp) protein (294aa)
dTDP-4-dehydrorhamnose reductase id=4950928 bin=GWC2_Methylomirabilis_70_16 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dTDP-4-dehydrorhamnose reductase Tax=GWC2_Rokubacteria_70_16_curated
dTDP-4-dehydrorhamnose reductase
13_1_40cm_4_scaffold_5800_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10139..10888)
DNA (750bp) protein (250aa)
fabG4; 3-oxoacyl-ACP reductase (EC:1.1.1.100) Tax=GWA2_Rokubacteria_73_35_curated
Short-chain dehydrogenase/reductase SDR id=3435260 bin=GWA2_Methylomirabilis_73_35 species=Haladaptatus paucihalophilus genus=Haladaptatus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-oxoacyl-ACP reductase
13_1_40cm_4_scaffold_5800_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10943..11404)
DNA (462bp) protein (154aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_4_scaffold_5800_14
unknown

Not on your lists

comp(11428..11550)
DNA (123bp) protein (41aa)

This feature has no annotations

13_1_40cm_4_scaffold_5800_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11759..12937
DNA (1179bp) protein (393aa)
livK1; ABC-type branched-chain amino acid transport systems, periplasmic component Tax=GWA2_Rokubacteria_73_35_curated
Branched-chain amino acid ABC transporter, amino acid-binding protein id=4734634 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livK1; ABC-type branched-chain amino acid transport systems, periplasmic component
13_1_40cm_4_scaffold_5800_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12950..13822
DNA (873bp) protein (291aa)
ABC transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000345A3A9
Branched-chain amino acid ABC-type transport system, permease component Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
13_1_40cm_4_scaffold_5800_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13819..14805
DNA (987bp) protein (329aa)
putative branched-chain amino acid ABC transporter (permease protein) Tax=GWA2_Rokubacteria_73_35_curated
Inner-membrane translocator id=4734631 bin=GWA2_Methylomirabilis_73_35 species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
13_1_40cm_4_scaffold_5800_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

14775..15569
DNA (795bp) protein (265aa)
ABC-type branched-chain amino acid transport systems, ATPase component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Branched-chain amino acid transport ATP-binding protein LivG id=4734630 bin=GWA2_Methylomirabilis_73_35 species=Rhodovulum sp. PH10 genus=Rhodovulum taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_4_scaffold_5800_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15850..16260
DNA (411bp) protein (137aa)
amino acid ABC transporter ATPase n=1 Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI00034D7AA2
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter
13_1_40cm_4_scaffold_5800_20
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(16167..17078)
DNA (912bp) protein (304aa)
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) id=14627063 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase (EC:2.1.1.107 4.2.1.75)
13_1_40cm_4_scaffold_5800_21
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(17078..17704)
DNA (627bp) protein (209aa)
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Siroheme synthase id=4306752 bin=GWF2_Methylomirabilis_70_14 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
uroporphyrin-III C-methyltransferase
13_1_40cm_4_scaffold_5800_22
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17704..18024)
DNA (321bp) protein (107aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_40cm_4_scaffold_5800_23
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(18021..19205)
DNA (1185bp) protein (395aa)
sat; Sulfate adenylyltransferase (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase) (EC:2.7.7.4) Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
sat; Sulfate adenylyltransferase (Sulfate adenylate transferase) (SAT) (ATP-sulfurylase) (EC:2.7.7.4)
Sulfate adenylyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMZ6_9BACT
13_1_40cm_4_scaffold_5800_24
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(19205..20095)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MMZ1_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68091.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
13_1_40cm_4_scaffold_5800_25
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20092..20817)
DNA (726bp) protein (242aa)
cysH; phosphoadenosine phosphosulfate reductase(PAPS reductase, thioredoxin dependent) (PAdoPS reductase) (3'-phosphoadenylylsulfate reductase) (PAPS sulfotransferase) (EC:1.8.4.8) Tax=RIFCSPLOWO2_12_
Putative PAPS reductase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0IIP3_NITGG
PAPS reductase
13_1_40cm_4_scaffold_5800_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(20804..21226)
DNA (423bp) protein (141aa)
Putative Sulfite/ferredoxin reductase (CysI) id=4894274 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase Tax=GWA2_Rokubacteria_73_35_curated
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase
13_1_40cm_4_scaffold_5800_27
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(21256..21603)
DNA (348bp) protein (116aa)
Putative Sulfite/ferredoxin reductase (CysI) id=4894274 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase Tax=GWA2_Rokubacteria_73_35_curated
uroporphyrinogen III synthase HEM4
Displaying items 1-30 of 35 in total

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