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This organism can only be binned in the context of its binning project SCN18_25_8_15_R2_B. Please contact the project owner (rohansach@berkeley.edu) to become a member and gain access.

13_1_40cm_4_scaffold_639

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_639_1
unknown

Not on your lists

comp(1..105)
DNA (105bp) protein (35aa)

This feature has no annotations

13_1_40cm_4_scaffold_639_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

155..673
DNA (519bp) protein (173aa)
id=4885132 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14625322 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_639_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1092..1673)
DNA (582bp) protein (194aa)
ThiJ/PfpI domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ThiJ/PfpI domain-containing protein id=14625351 bin=bin7_NC10_sister species=Bacillus methanolicus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ThiJ/PfpI domain-containing protein
13_1_40cm_4_scaffold_639_4
Ktedonobacter racemifer, Ktedonobacter, Ktedonobacterales, Ktedonobacteria, Chloroflexi, Bacteria

Not on your lists

comp(1679..2374)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TCE3_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EFH89960.1}; TaxID=485913 species="Bacteria; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Ktedonobacteraceae; Ktedonobacter.;" source="Ktedonobacter racem
hypothetical protein
13_1_40cm_4_scaffold_639_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2371..2901)
DNA (531bp) protein (177aa)
siderophore-binding protein id=4485938 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
carbonic anhydrase Tax=GWA2_Rokubacteria_70_23_curated
carbonic anhydrase
13_1_40cm_4_scaffold_639_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2975..4000
DNA (1026bp) protein (342aa)
Chalcone and stilbene synthase domain protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Chalcone and stilbene synthase domain protein id=14627397 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Chalcone and stilbene synthase domain protein
13_1_40cm_4_scaffold_639_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4124..4798
DNA (675bp) protein (225aa)
SAM-dependent methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
type 11 methyltransferase id=14627396 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Methyltransferase type 11
13_1_40cm_4_scaffold_639_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4795..5997
DNA (1203bp) protein (401aa)
Electron transfer oxidoreductase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Electron transfer oxidoreductase id=14627395 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Electron transfer oxidoreductase
13_1_40cm_4_scaffold_639_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6071..6736
DNA (666bp) protein (222aa)
Dimethylmenaquinone methyltransferase n=1 Tax=Haloferax gibbonsii ATCC 33959 RepID=M0HNA0_9EURY
dimethylmenaquinone methyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dimethylmenaquinone methyltransferase
13_1_40cm_4_scaffold_639_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6854..8272)
DNA (1419bp) protein (473aa)
peptidase M23 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase M23 id=3068131 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase M23
13_1_40cm_4_scaffold_639_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8323..10197
DNA (1875bp) protein (625aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] id=14625912 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5)
13_1_40cm_4_scaffold_639_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

10194..11720
DNA (1527bp) protein (509aa)
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
proton-translocating NADH-quinone oxidoreductase subunit M (EC:1.6.99.5)
Proton-translocating NADH-quinone oxidoreductase, chain M id=3704552 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_639_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11717..13171
DNA (1455bp) protein (485aa)
nuoN-1; NADH dehydrogenase I subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NADH-quinone oxidoreductase subunit N id=3704556 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nuoN-1; NADH dehydrogenase I subunit N
13_1_40cm_4_scaffold_639_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13258..13743
DNA (486bp) protein (162aa)
CoA-transferase (EC:2.8.3.-)
L-carnitine dehydratase/bile acid-inducible protein F Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
L-carnitine dehydratase/bile acid-inducible protein F id=3704563 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_639_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13740..16085
DNA (2346bp) protein (782aa)
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FAD dependent oxidoreductase; K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3] id=14625916 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
FAD dependent oxidoreductase
13_1_40cm_4_scaffold_639_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16082..16639
DNA (558bp) protein (186aa)
ugpE2; sn-glycerol-3-phosphate transport system permease; K05815 sn-glycerol 3-phosphate transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
sn-glycerol-3-phosphate ABC transporter,permease protein id=4644054 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ugpE; glycerol-3-phosphate ABC transporter membrane protein
13_1_40cm_4_scaffold_639_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16640..17440
DNA (801bp) protein (267aa)
glycerophosphodiester phosphodiesterase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycerophosphodiester phosphodiesterase family protein id=4980422 bin=GWA2_Methylomirabilis_73_35 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycerophosphodiester phosphodiesterase
13_1_40cm_4_scaffold_639_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17499..18239
DNA (741bp) protein (247aa)
glycerophosphodiester phosphodiesterase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycerophosphodiester phosphodiesterase family protein id=4980422 bin=GWA2_Methylomirabilis_73_35 species=Acetobacteraceae bacterium AT-5844 genus=unknown taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycerophosphodiester phosphodiesterase
13_1_40cm_4_scaffold_639_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18236..19075
DNA (840bp) protein (280aa)
glycerol kinase; K00864 glycerol kinase [EC:2.7.1.30] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
glpK; glycerol kinase (EC:2.7.1.30)
Glycerol kinase id=4980423 bin=GWA2_Methylomirabilis_73_35 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 19 items

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