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13_1_40cm_4_scaffold_733

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_733_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1..609
DNA (609bp) protein (203aa)
citrate synthase (EC:2.3.3.1); K01647 citrate synthase [EC:2.3.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
citrate synthase (EC:2.3.3.1)
Citrate synthase id=3963832 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_733_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

612..1559
DNA (948bp) protein (316aa)
Aconitate hydratase id=3841313 bin=GWF2_Methylomirabilis_70_14 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aconitate hydratase Tax=CSP1_6_Rokubacteria
aconitate hydratase, putative, Aquifex type
13_1_40cm_4_scaffold_733_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1565..2479
DNA (915bp) protein (305aa)
aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase id=3963830 bin=GWA2_Methylomirabilis_73_35 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_733_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

2653..3753
DNA (1101bp) protein (367aa)
PrpF family protein; K09788 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
AcnD-accessory protein PrpF id=3841322 bin=GWF2_Methylomirabilis_70_14 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PrpF family protein
13_1_40cm_4_scaffold_733_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3750..4292
DNA (543bp) protein (181aa)
id=3296245 Tax=GWA2_Rokubacteria_73_35_curated
id=14627426 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_733_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

4289..5689
DNA (1401bp) protein (467aa)
acyltransferase domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
phospholipid/glycerol acyltransferase id=14627947 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_733_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

5793..6002
DNA (210bp) protein (70aa)
creatinine amidohydrolase; K01470 creatinine amidohydrolase [EC:3.5.2.10] Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=4895061 bin=GWC2_Methylomirabilis_70_16 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_733_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6002..6715
DNA (714bp) protein (238aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.55) Tax=GWA2_Rokubacteria_73_35_curated
3-hydroxybutyryl-CoA dehydratase id=3963825 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Porphyromonas taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-hydroxyacyl-CoA dehydrogenase
13_1_40cm_4_scaffold_733_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6849..9089)
DNA (2241bp) protein (747aa)
Metal-dependent hydrolase, beta-lactamase superfamily I n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9P7N2_CYAGP
putative phytochrome sensor protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
beta-lactamase superfamily metal-dependent hydrolase
13_1_40cm_4_scaffold_733_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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9232..10503
DNA (1272bp) protein (424aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
ABC-type branched-chain amino acid transport systems, periplasmic component id=4923977 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
twin-arginine translocation pathway signal protein
13_1_40cm_4_scaffold_733_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

10541..11401
DNA (861bp) protein (287aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=14626691 bin=bin7_NC10_sister species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
inner-membrane translocator
13_1_40cm_4_scaffold_733_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11398..13257
DNA (1860bp) protein (620aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14626692 bin=bin7_NC10_sister species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
branched-chain amino acid ABC transporter permease
13_1_40cm_4_scaffold_733_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13257..13967
DNA (711bp) protein (237aa)
ABC transporter ATP-binding protein, putative branched-chain amino acid transport id=4923985 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter ATP-binding protein I; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWC2_Rokubacteria_70_16_curated
ABC transporter
13_1_40cm_4_scaffold_733_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13964..14995
DNA (1032bp) protein (344aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] id=14626695 bin=bin7_NC10_sister species=Roseiflexus castenholzii genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14] Tax=CSP1_6_Rokubacteria
methionine synthase, vitamin-B12 independent
13_1_40cm_4_scaffold_733_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15020..16210
DNA (1191bp) protein (397aa)
Formyl-CoA transferase (EC:2.8.3.16) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Formyl-CoA transferase id=1924176 bin=GWA2_Methylomirabilis_73_35 species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
L-carnitine dehydratase/bile acid-inducible protein F
13_1_40cm_4_scaffold_733_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

16261..16995
DNA (735bp) protein (245aa)
fadB; enoyl CoA hydratase Tax=GWA2_Rokubacteria_73_35_curated
Enoyl CoA hydratase id=1924174 bin=GWA2_Methylomirabilis_73_35 species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fadB; enoyl CoA hydratase
13_1_40cm_4_scaffold_733_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

17018..18151
DNA (1134bp) protein (378aa)
Acyl-CoA dehydrogenase id=1924172 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
mmgC1; acyl-CoA dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
mmgC1; acyl-CoA dehydrogenase
13_1_40cm_4_scaffold_733_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18266..19216
DNA (951bp) protein (317aa)
mvaB; hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4); K01640 hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4] Tax=GWA2_Rokubacteria_73_35_curated
mvaB; hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4)
Putative hydroxymethylglutaryl-CoA lyase id=3674961 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_733_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19216..19782
DNA (567bp) protein (189aa)
Putative O-methyltransferase id=1924162 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
O-methyltransferase family protein Tax=GWA2_Rokubacteria_73_35_curated
O-methyltransferase
13_1_40cm_4_scaffold_733_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19882..20961
DNA (1080bp) protein (360aa)
luciferase family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Luciferase family protein id=1924160 bin=GWA2_Methylomirabilis_73_35 species=Nocardioides sp. genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase family protein
13_1_40cm_4_scaffold_733_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20958..21665
DNA (708bp) protein (236aa)
Lipolytic enzyme, G-D-S-L id=1924158 bin=GWA2_Methylomirabilis_73_35 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipolytic protein Tax=GWA2_Rokubacteria_73_35_curated
adventurous gliding motility protein C
13_1_40cm_4_scaffold_733_22
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21752..22006)
DNA (255bp) protein (85aa)
Uncharacterised protein {ECO:0000313|EMBL:CRE31638.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
13_1_40cm_4_scaffold_733_23
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

22219..22476
DNA (258bp) protein (86aa)
Integral membrane protein TerC id=4290026 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
integral membrane protein TerC Tax=GWC2_Rokubacteria_70_16_curated
integral membrane protein TerC
13_1_40cm_4_scaffold_733_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(22473..24434)
DNA (1962bp) protein (654aa)
Uncharacterised monovalent cation:proton antiporter, CPA2 family n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PBM9_9BACT
ybaL; monovalent cation:proton antiporter; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ybaL; monovalent cation:proton antiporter
13_1_40cm_4_scaffold_733_25
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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24540..25433
DNA (894bp) protein (298aa)
dihydrouridine synthase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
tRNA-dihydrouridine synthase id=3938344 bin=GWF2_Methylomirabilis_70_14 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
tRNA-U20-dihydrouridine synthase
13_1_40cm_4_scaffold_733_26
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

25430..25876
DNA (447bp) protein (149aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4813748 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydratase
13_1_40cm_4_scaffold_733_27
unknown

Not on your lists

26281..26439
DNA (159bp) protein (53aa)

This feature has no annotations

13_1_40cm_4_scaffold_733_28
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(26441..27541)
DNA (1101bp) protein (367aa)
Low-specificity threonine aldolase id=4813750 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium FLS18 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
alanine racemase domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
alanine racemase domain-containing protein
13_1_40cm_4_scaffold_733_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

27632..28792
DNA (1161bp) protein (387aa)
serine--glyoxylate transaminase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] Tax=GWA2_Rokubacteria_70_23_cura
serine-glyoxylate aminotransferase (EC:2.6.1.44 2.6.1.45 2.6.1.51)
Serine-glyoxylate aminotransferase-related protein id=3938360 bin=GWF2_Methylomirabilis_70_14 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_733_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(28820..29143)
DNA (324bp) protein (108aa)
hypothetical protein id=4766715 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Displaying items 1-30 of 70 in total

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