ggKbase home page

13_1_40cm_4_scaffold_781

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_781_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..1731)
DNA (1731bp) protein (577aa)
fumarate reductase, or succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1); K00244 fumarate reductase flavoprotein subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
fumarate reductase, or succinate dehydrogenase, flavoprotein subunit (EC:1.3.99.1)
Putative succinate dehydrogenase flavoprotein subunit id=4740802 bin=GWC2_Methylomirabilis_70_16 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_781_2
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(1728..2003)
DNA (276bp) protein (92aa)
resA; thiol-disulfide oxidoreductase resA Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
putative thiol-disulfide oxidoreductase id=14627055 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_781_3
unknown

Not on your lists

comp(2043..2315)
DNA (273bp) protein (91aa)
redoxin; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
13_1_40cm_4_scaffold_781_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2328..4037)
DNA (1710bp) protein (570aa)
SoxB domain
h16_A3563; 5'-nucleotidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
h16_A3563; 5'-nucleotidase id=14627057 bin=bin7_NC10_sister species=unknown genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
5'-nucleotidase
13_1_40cm_4_scaffold_781_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4107..5327)
DNA (1221bp) protein (407aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4458008 bin=GWC2_Methylomirabilis_70_24 species=Halorhodospira halophila genus=Halorhodospira taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_781_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5324..5656)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Sulfur compound chelating protein SoxZ id=4841180 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Magnetococcus taxon_order=Magnetococcales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_781_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5663..6160)
DNA (498bp) protein (166aa)
sulfur oxidation protein SoxY Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4841179 bin=GWA2_Methylomirabilis_73_35 species=Xanthobacter autotrophicus genus=Xanthobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sulfur oxidation protein SoxY
13_1_40cm_4_scaffold_781_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6606..7412)
DNA (807bp) protein (269aa)
Putative membrane protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9C0_CARHZ
hypothetical protein; K07090 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_4_scaffold_781_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7476..8060)
DNA (585bp) protein (195aa)
cytochrome c class I Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Cytochrome c id=3662435 bin=GWA2_Methylomirabilis_73_35 species=Phenylobacterium zucineum genus=Phenylobacterium taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome c, class I
13_1_40cm_4_scaffold_781_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(8079..9341)
DNA (1263bp) protein (421aa)
soxF; sulfide dehydrogenase (flavocytochrome), flavoprotein subunit id=14625587 bin=bin7_NC10_sister species=Ralstonia sp. PBA genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
soxF; sulfide dehydrogenase (flavocytochrome), flavoprotein subunit Tax=CSP1_6_Rokubacteria
soxF; flavocytochrome c sulfide dehydrogenase protein
13_1_40cm_4_scaffold_781_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9376..10545)
DNA (1170bp) protein (390aa)
hypothetical protein; K07112 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3662437 bin=GWA2_Methylomirabilis_73_35 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_781_12
RBG_16_Deltaproteobacteria_42_7_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11144..12079
DNA (936bp) protein (312aa)
hypothetical protein Tax=RBG_16_Deltaproteobacteria_42_7_curated
hypothetical protein id=3472292 bin=GWA2_Elusimicrobia_56_46 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
13_1_40cm_4_scaffold_781_13
GWA2_Elusimicrobia_51_34_curated, Elusimicrobia, Bacteria

Not on your lists

12234..13007
DNA (774bp) protein (258aa)
Putative uncharacterized protein id=4691346 bin=GWC2_Elusimicrobia_51_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
hypothetical protein Tax=GWA2_Elusimicrobia_51_34_curated
hypothetical protein
13_1_40cm_4_scaffold_781_14
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13012..13821)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00037BB768
aldolase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
class II aldolase
13_1_40cm_4_scaffold_781_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13821..15899)
DNA (2079bp) protein (693aa)
fusA; elongation factor G Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Elongation factor G id=3662439 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
fusA; elongation factor G
13_1_40cm_4_scaffold_781_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16062..17297)
DNA (1236bp) protein (412aa)
threonine synthase; K01733 threonine synthase [EC:4.2.3.1] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
thrC; threonine synthase (EC:4.2.3.1)
Elongation factor G id=3662439 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_781_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(17520..18065)
DNA (546bp) protein (182aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_781_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18183..19175)
DNA (993bp) protein (331aa)
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC:1.17.1.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (EC:1.17.1.2)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase id=3662441 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_781_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19183..19788)
DNA (606bp) protein (202aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14625615 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_781_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19785..20810)
DNA (1026bp) protein (342aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.14) id=14625616 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
theronine dehydrogenase-like Zn-dependent dehydrogenase
13_1_40cm_4_scaffold_781_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20807..21814)
DNA (1008bp) protein (336aa)
alcohol dehydrogenase (EC:1.1.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
alcohol dehydrogenase (EC:1.1.1.1) id=14625617 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
alcohol dehydrogenase (EC:1.1.1.1)
13_1_40cm_4_scaffold_781_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21811..22701)
DNA (891bp) protein (297aa)
squalene/phytoene synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
squalene/phytoene synthase id=14625618 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
squalene/phytoene synthase
13_1_40cm_4_scaffold_781_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22698..23711)
DNA (1014bp) protein (338aa)
hopanoid-associated sugar epimerase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hopanoid-associated sugar epimerase id=4350132 bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hopanoid-associated sugar epimerase
Displaying 23 items

View Taxonomy