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13_1_40cm_4_scaffold_7994

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_7994_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

3..452
DNA (450bp) protein (150aa)
Putative uncharacterized protein id=4900379 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_7994_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

524..1192
DNA (669bp) protein (223aa)
Putative membrane protein id=4900378 bin=GWA2_Methylomirabilis_73_35 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative transporter dctQ related transmembrane protein Tax=GWA2_Rokubacteria_73_35_curated
Transport protein permease
13_1_40cm_4_scaffold_7994_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1216..3246
DNA (2031bp) protein (677aa)
TRAP C4-dicarboxylate transport system permease DctM Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative TRAP-type C4-dicarboxylate transport system, large permease component id=4900377 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
C4-dicarboxylate ABC transporter
13_1_40cm_4_scaffold_7994_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3437..4711
DNA (1275bp) protein (425aa)
amidase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
amidase id=14430439 bin=bin3_NC10 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
amidase
13_1_40cm_4_scaffold_7994_5
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

4791..6245
DNA (1455bp) protein (485aa)
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
hypothetical protein n=1 Tax=Synechococcus sp. PCC 7336 RepID=UPI0003457519
succinate-semialdehyde dehydrogenase
13_1_40cm_4_scaffold_7994_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6276..6440
DNA (165bp) protein (55aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative regulatory protein, FmdB family id=4900375 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FmdB family regulatory protein
13_1_40cm_4_scaffold_7994_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6453..6977
DNA (525bp) protein (175aa)
Pfpi family intracellular protease; K05520 protease I [EC:3.2.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Intracellular protease, PfpI family id=4900374 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Pfpi family intracellular protease
13_1_40cm_4_scaffold_7994_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7128..8861
DNA (1734bp) protein (578aa)
carbamoyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Carbamoyl transferase id=4759402 bin=GWC2_Methylomirabilis_70_16 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
carbamoyl transferase, NodU family
13_1_40cm_4_scaffold_7994_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8936..9883)
DNA (948bp) protein (316aa)
Putative 2-hydroxyacid dehydrogenase id=4900340 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_7994_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9880..10830)
DNA (951bp) protein (317aa)
3-beta hydroxysteroid dehydrogenase/isomerase family id=4900339 bin=GWA2_Methylomirabilis_73_35 species=Gloeocapsa sp. PCC 73106 genus=Gloeocapsa taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
NAD-dependent epimerase/dehydratase Tax=GWA2_Rokubacteria_73_35_curated
nucleoside-diphosphate-sugar epimerase
13_1_40cm_4_scaffold_7994_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10832..11110)
DNA (279bp) protein (93aa)
transcriptional regulator, AsnC family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=4385649 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative HTH-type transcriptional regulator
13_1_40cm_4_scaffold_7994_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11111..11533)
DNA (423bp) protein (141aa)
id=14627948 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=14627948 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_7994_13
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(11544..11771)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Thermoproteus uzoniensis (strain 768-20) RepID=F2L533_THEU7
hypothetical protein Tax=RBG_16_Chloroflexi_68_14_curated
hypothetical protein
13_1_40cm_4_scaffold_7994_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11778..16073)
DNA (4296bp) protein (1432aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-] Tax=GWA2_Rokubacteria_73_35_curated
DEAD/H associated domain protein id=4895050 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DEAD/DEAH box helicase
13_1_40cm_4_scaffold_7994_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

16110..16496
DNA (387bp) protein (129aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_4_scaffold_7994_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16543..17706
DNA (1164bp) protein (388aa)
Geranylgeranyl reductase n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V217_TERSS
geranylgeranyl reductase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
geranylgeranyl reductase
13_1_40cm_4_scaffold_7994_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(17682..17858)
DNA (177bp) protein (59aa)
hypothetical protein id=14626282 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
13_1_40cm_4_scaffold_7994_18
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18006..19367
DNA (1362bp) protein (454aa)
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein Tax=RBG_16_Deltaproteobacteria_49_23_curated
Sugar ABC superfamily ATP binding cassette transporter, substrate-binding id=1703830 bin=GWA2_Methylomirabilis_73_35 species=Mobiluncus mulieris genus=Mobiluncus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
family 1 extracellular solute-binding protein
13_1_40cm_4_scaffold_7994_19

Not on your lists

19480..20337
DNA (858bp) protein (286aa)
Uncharacterized protein {ECO:0000313|EMBL:KKL70358.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Binding-protein-dependent transport systems inner membrane component id=1703832 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type sugar transport systems, permease component
13_1_40cm_4_scaffold_7994_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20334..21170
DNA (837bp) protein (279aa)
ABC-type sugar transport systems, permease component Tax=GWA2_Rokubacteria_73_35_curated
ABC-type sugar transport system, permease component id=1703834 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia sp. Ch1-1 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type sugar transport systems, permease component
13_1_40cm_4_scaffold_7994_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22224..23540
DNA (1317bp) protein (439aa)
oxidoreductase (EC:1.-.-.-); K09461 anthraniloyl-CoA monooxygenase [EC:1.14.13.40] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxidoreductase n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3AAA3_9PROT
salicylyl-CoA 5-hydroxylase
13_1_40cm_4_scaffold_7994_22
unknown

Not on your lists

comp(23549..23728)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 22 items

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