ggKbase home page

13_1_40cm_4_scaffold_917

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_917_1
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..360
DNA (360bp) protein (120aa)
hypothetical protein n=1 Tax=Amycolatopsis balhimycina RepID=UPI00037AD2C1
Phosphoesterase {ECO:0000313|EMBL:KJK51687.1}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia ae
phosphoesterase
13_1_40cm_4_scaffold_917_2
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(390..2498)
DNA (2109bp) protein (703aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IA34_METNO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
hypothetical protein
13_1_40cm_4_scaffold_917_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2660..3526)
DNA (867bp) protein (289aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Membrane protein id=3692272 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Halothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_917_4
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(3570..4115)
DNA (546bp) protein (182aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=4536966 bin=GWF2_Methylomirabilis_70_14 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_917_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4112..4387)
DNA (276bp) protein (92aa)
Alpha/beta hydrolase fold protein id=3479511 bin=GWC2_Methylomirabilis_70_16 species=Nostoc sp. PCC 7107 genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
alpha/beta fold family hydrolase Tax=GWC2_Rokubacteria_70_16_curated
alpha/beta fold family hydrolase
13_1_40cm_4_scaffold_917_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4456..5472)
DNA (1017bp) protein (339aa)
zinc-containing alcohol dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Alcohol dehydrogenase, zinc-containing id=2278573 bin=GWA2_Elusimicrobia_69_24 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
zinc-containing alcohol dehydrogenase
13_1_40cm_4_scaffold_917_7
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(5629..6381)
DNA (753bp) protein (251aa)
Short-chain dehydrogenase/reductase SDR id=3479322 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
short-chain dehydrogenase/reductase SDR Tax=GWA2_Elusimicrobia_69_24_curated
2-deoxy-D-gluconate 3-dehydrogenase
13_1_40cm_4_scaffold_917_8
unknown

Not on your lists

comp(6378..6497)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_4_scaffold_917_9
GWA2_Elusimicrobia_69_24_curated, Elusimicrobia, Bacteria

Not on your lists

comp(6523..7530)
DNA (1008bp) protein (336aa)
long-chain fatty-acid-CoA ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3] Tax=GWA2_Elusimicrobia_69_24_curated
AMP-dependent synthetase and ligase id=2278568 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
long-chain fatty acid--CoA ligase
13_1_40cm_4_scaffold_917_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7531..8319)
DNA (789bp) protein (263aa)
long-chain fatty acid CoA ligase (AMP-binding) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
AMP-dependent synthetase and ligase id=2278568 bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
AMP-dependent synthetase and ligase
13_1_40cm_4_scaffold_917_11
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

8483..8929
DNA (447bp) protein (149aa)
id=14626096 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
id=14626096 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_4_scaffold_917_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8991..9482)
DNA (492bp) protein (164aa)
Polyhydroxyalkanoate synthesis repressor PhaR id=2278566 bin=GWA2_Elusimicrobia_69_24 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
polyhydroxyalkanoate synthesis repressor PhaR Tax=GWC2_Rokubacteria_70_16_curated
polyhydroxyalkanoate synthesis repressor PhaR
13_1_40cm_4_scaffold_917_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9586..10329
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-(Acyl-carrier-protein) reductase id=3479316 bin=GWC2_Methylomirabilis_70_16 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
3-oxoacyl-(acyl-carrier-protein) reductase
13_1_40cm_4_scaffold_917_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(10336..10902)
DNA (567bp) protein (189aa)
Acyl dehydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Acyl dehydratase id=3479315 bin=GWC2_Methylomirabilis_70_16 species=Caulobacter sp. genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl dehydratase
13_1_40cm_4_scaffold_917_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10899..11465)
DNA (567bp) protein (189aa)
Putative uncharacterized protein id=3479314 bin=GWC2_Methylomirabilis_70_16 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_4_scaffold_917_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(11524..12570)
DNA (1047bp) protein (349aa)
poly(R)-hydroxyalkanoic acid synthase subunit PhaC id=14626101 bin=bin7_NC10_sister species=Aneurinibacillus aneurinilyticus genus=Aneurinibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
poly(R)-hydroxyalkanoic acid synthase subunit PhaC Tax=CSP1_6_Rokubacteria
poly(R)-hydroxyalkanoic acid synthase subunit PhaC
13_1_40cm_4_scaffold_917_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12604..12927)
DNA (324bp) protein (108aa)
sterol-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative sterol carrier protein id=4320175 bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
sterol-binding protein
13_1_40cm_4_scaffold_917_18
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(12915..13679)
DNA (765bp) protein (255aa)
dehydrogenase/reductase 11 (EC:1.1.1.-); K00100 [EC:1.1.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
dehydrogenase/reductase 11 (EC:1.1.1.-)
Probable oxidoreductase (Short-chain dehydrogenase family) id=3526405 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_917_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13752..14441)
DNA (690bp) protein (230aa)
enoyl-CoA hydratase/carnithine racemase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Enoyl-CoA hydratase/isomerase id=3526406 bin=GWC2_Methylomirabilis_70_16 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
enoyl-CoA hydratase/carnithine racemase
13_1_40cm_4_scaffold_917_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14431..15018)
DNA (588bp) protein (196aa)
TetR family transcriptional regulator; K13770 TetR/AcrR family transcriptional regulator, fatty acid metabolism regulator protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Transcriptional regulator, TetR family id=1890906 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TetR family transcriptional regulator
13_1_40cm_4_scaffold_917_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(15079..15366)
DNA (288bp) protein (96aa)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_4_scaffold_917_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15541..16002
DNA (462bp) protein (154aa)
Putative F420-dependent dehydrogenase id=1890912 bin=GWA2_Methylomirabilis_73_35 species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative oxidoreductase Tax=GWA2_Rokubacteria_73_35_curated
luciferase
13_1_40cm_4_scaffold_917_23
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(16199..16363)
DNA (165bp) protein (55aa)
id=14625542 Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
13_1_40cm_4_scaffold_917_24
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(16482..17012)
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Methylococcus capsulatus RepID=UPI0002E37F05
cytochrome C class I Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
putative cytochrome c
13_1_40cm_4_scaffold_917_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(16999..18273)
DNA (1275bp) protein (425aa)
Oxidoreductase molybdopterin binding n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRU0_METTR
oxidoreductase molybdopterin binding protein Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
oxidoreductase molybdopterin binding protein
13_1_40cm_4_scaffold_917_26
unknown

Not on your lists

comp(18402..18692)
DNA (291bp) protein (97aa)

This feature has no annotations

Displaying 26 items

View Taxonomy