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13_1_40cm_4_scaffold_2017_3

Organism: 13_1_40CM_4_Rokubacteria_69_5

near complete RP 45 / 55 MC: 3 BSCG 41 / 51 ASCG 13 / 38
Location: comp(1097..1612)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 86.7
  • Coverage: 166.0
  • Bit_score: 302
  • Evalue 3.80e-79
RNA polymerase sigma factor id=4801469 bin=GWC2_Methylomirabilis_70_16 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 similarity UNIREF
DB: UNIREF100
  • Identity: 73.8
  • Coverage: 168.0
  • Bit_score: 257
  • Evalue 7.60e-66
ECF subfamily RNA polymerase sigma-24 similarity KEGG
DB: KEGG
  • Identity: 44.4
  • Coverage: 171.0
  • Bit_score: 148
  • Evalue 2.40e-33

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Taxonomy

R_Rokubacteria_73_56 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 516
GTGACGACCGACCCCGAGTTCCGACGCCAGGCGCTCGAGCATCTCGACGCCCTCTACAACTTCGCCGTGTATCTCACCCGGAAGCCCTCCGAGGCGGAGGACCTGGTCCAGGAGACCTACCTCCGGGCGCTCCGGTTCTCCCACCGCTTCCAGCCGGGAACTCACCTCCGTGCGTGGTTGTTTCAAATTCTGAGGAACACGTTCTTGACCTTTTATCGCCTCCGCGAGCGGGAATCCCCCATCGCGGAAGACGGCGTCCCCGAGTGGGACGCCCCGATGTTTCACGACGCCCCGGTCGAGGGCCCCGGGATGCTCGAGGCTCACACCGACCTCGAGCGCGCCCTGCTGCGGCTGCCGGAAGAGTTCCGGACGGTGCTTCTCCTGGCCGAGATCGAAGGGATGCCGCTCGAAGAGGTGGCCCAGGTGATGGCCTGCCCGGTCGGCACCGTCAAGTCCCGCATCTTCCGCGCGAAGGAGCGGCTGCGCAGCTTGCTGCGCGACTACGAAGGACGATGA
PROTEIN sequence
Length: 172
VTTDPEFRRQALEHLDALYNFAVYLTRKPSEAEDLVQETYLRALRFSHRFQPGTHLRAWLFQILRNTFLTFYRLRERESPIAEDGVPEWDAPMFHDAPVEGPGMLEAHTDLERALLRLPEEFRTVLLLAEIEGMPLEEVAQVMACPVGTVKSRIFRAKERLRSLLRDYEGR*