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13_1_40cm_4_scaffold_2017

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2017_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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2..340
DNA (339bp) protein (113aa)
hypothetical protein id=14627941 bin=bin7_NC10_sister species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_4_scaffold_2017_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(393..1100)
DNA (708bp) protein (236aa)
id=14627111 Tax=GWA2_Rokubacteria_73_35_curated
id=14627111 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_4_scaffold_2017_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1097..1612)
DNA (516bp) protein (172aa)
ECF subfamily RNA polymerase sigma-24; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4801469 bin=GWC2_Methylomirabilis_70_16 species=Thermobispora bispora genus=Thermobispora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ECF subfamily RNA polymerase sigma-24
13_1_40cm_4_scaffold_2017_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1620..2168)
DNA (549bp) protein (183aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3] Tax=GWA2_Rokubacteria_73_35_cura
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3)
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase id=2164593 bin=GWA2_Methylomirabilis_73_35 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2017_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(2168..2527)
DNA (360bp) protein (120aa)
dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dihydroneopterin aldolase (EC:4.1.2.25)
Dihydroneopterin aldolase id=2164663 bin=GWA2_Methylomirabilis_73_35 species=Streptococcus ictaluri genus=Streptococcus taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2017_6
unknown

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comp(2527..2673)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_4_scaffold_2017_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2688..3488)
DNA (801bp) protein (267aa)
dapB; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=GWA2_Rokubacteria_73_35_curated
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
Dihydrodipicolinate reductase id=2164669 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2017_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(3511..4398)
DNA (888bp) protein (296aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dapA; dihydrodipicolinate synthase (EC:4.2.1.52)
Dihydrodipicolinate synthase id=4801457 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2017_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(4395..5645)
DNA (1251bp) protein (417aa)
lysA; diaminopimelate decarboxylase (EC:4.1.1.20) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Diaminopimelate decarboxylase id=2164678 bin=GWA2_Methylomirabilis_73_35 species=Leptospirillum ferrodiazotrophum genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
diaminopimelate decarboxylase
13_1_40cm_4_scaffold_2017_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5702..6784)
DNA (1083bp) protein (361aa)
Putative Fibronectin, type III id=2164681 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fibronectin, type III Tax=GWA2_Rokubacteria_73_35_curated
Fibronectin, type III
13_1_40cm_4_scaffold_2017_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6784..8163)
DNA (1380bp) protein (460aa)
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
argH; argininosuccinate lyase (EC:4.3.2.1) id=14627101 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
argininosuccinate lyase
13_1_40cm_4_scaffold_2017_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8160..8831)
DNA (672bp) protein (224aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyltransferase id=4801449 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
1-acyl-sn-glycerol-3-phosphate acyltransferase
13_1_40cm_4_scaffold_2017_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(8854..9711)
DNA (858bp) protein (286aa)
aminodeoxychorismate lyase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aminodeoxychorismate lyase id=14627099 bin=bin7_NC10_sister species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
aminodeoxychorismate lyase
13_1_40cm_4_scaffold_2017_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9865..10857
DNA (993bp) protein (331aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha id=4231232 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 14 items

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