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13_1_40cm_4_scaffold_225

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_225_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

1..1797
DNA (1797bp) protein (599aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG88819.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
id=4555950 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_1_40cm_4_scaffold_225_2
RBG_19FT_COMBO_Euryarchaeota_56_21_curated, Euryarchaeota, Archaea

Not on your lists

comp(1872..2453)
DNA (582bp) protein (194aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2TE05_LEIAQ
esterase/lipase superfamily protein Tax=RBG_19FT_COMBO_Euryarchaeota_56_21_curated
alpha/beta hydrolase
13_1_40cm_4_scaffold_225_3
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2820..4271)
DNA (1452bp) protein (484aa)
BNR/Asp-box repeat protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JVE3_BURP8
BNR/Asp-box repeat-containing protein
BNR/Asp-box repeat protein {ECO:0000313|EMBL:ACC74920.1}; Flags: Precursor;; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" sour
13_1_40cm_4_scaffold_225_4
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(4532..5998)
DNA (1467bp) protein (489aa)
id=3023559 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
id=3023559 Tax=GWC2_RIF_CHLX_73_18_curated
13_1_40cm_4_scaffold_225_5
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6240..7037)
DNA (798bp) protein (266aa)
abmC; enoyl-CoA hydratase (EC:4.2.1.17)
Putative enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:CAM02410.1}; EC=4.2.1.- {ECO:0000313|EMBL:CAM02410.1};; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae;
enoyl-CoA hydratase n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI000370DBD8
13_1_40cm_4_scaffold_225_6
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7034..7444)
DNA (411bp) protein (137aa)
endoribonuclease L-PSP n=1 Tax=Glaciibacter superstes RepID=UPI0003B4C412
pyrimidine utilization protein C
Pyrimidine utilization protein C {ECO:0000313|EMBL:AIJ23762.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanoli
13_1_40cm_4_scaffold_225_7
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7471..9084
DNA (1614bp) protein (538aa)
AMP-dependent acetyl-coenzyme A synthetase and ligase (EC:6.2.1.1)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI000369AE3A
AMP-dependent synthetase {ECO:0000313|EMBL:EQD83635.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea
13_1_40cm_4_scaffold_225_8
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9330..11438
DNA (2109bp) protein (703aa)
Salicylyl-CoA 5-hydroxylase n=3 Tax=Amycolatopsis mediterranei RepID=D8HIY5_AMYMU
salicylyl-CoA 5-hydroxylase
Salicylyl-CoA 5-hydroxylase {ECO:0000313|EMBL:AEK47059.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (s
13_1_40cm_4_scaffold_225_9
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11493..12863
DNA (1371bp) protein (457aa)
trpB2; Tryptophan synthase beta chain 2 (EC:4.2.1.20)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133, ECO:0000313|EMBL:CCH29719.1};; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudono
Tryptophan synthase beta chain n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0JYD7_SACES
13_1_40cm_4_scaffold_225_10
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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13083..15374
DNA (2292bp) protein (764aa)
Transcriptional regulator, LuxR family n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARX2_RUBXD
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABG05856.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;"
13_1_40cm_4_scaffold_225_11
unknown

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15401..15646
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_40cm_4_scaffold_225_12
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

15643..16458
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AZB9_RUBXD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG03259.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrob
13_1_40cm_4_scaffold_225_13

Not on your lists

comp(16714..17529)
DNA (816bp) protein (272aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGG1_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KKN89180.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_4_scaffold_225_14
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17526..18743)
DNA (1218bp) protein (406aa)
L-carnitine dehydratase/bile acid-inducible protein F (EC:2.8.3.16)
L-carnitine dehydratase/bile acid-inducible protein F n=2 Tax=Saccharopolyspora erythraea RepID=A4FG37_SACEN
CoA transferase {ECO:0000313|EMBL:EQD85485.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea D.;"
13_1_40cm_4_scaffold_225_15
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18730..19488)
DNA (759bp) protein (253aa)
short-chain alcohol dehydrogenase Tax=RBG_16_Betaproteobacteria_64_18_curated
Short-chain dehydrogenase id=2247805 bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain alcohol dehydrogenase
13_1_40cm_4_scaffold_225_16
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19553..20530
DNA (978bp) protein (326aa)
serA; D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase n=3 Tax=Saccharopolyspora erythraea RepID=A4FIJ9_SACEN
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:EQD87852.1}; TaxID=1382595 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythr
13_1_40cm_4_scaffold_225_17
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20527..21306
DNA (780bp) protein (260aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC:4.1.2.20)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=2 Tax=Saccharopolyspora erythraea RepID=A4F7L7_SACEN
Uncharacterized protein {ECO:0000313|EMBL:KEI43409.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula
13_1_40cm_4_scaffold_225_18
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(21339..22259)
DNA (921bp) protein (307aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Probable sugar ABC transporter, permease protein id=3239150 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
sugar ABC transporter permease
13_1_40cm_4_scaffold_225_19
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22260..23192)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMD8_BRAJP
ABC transporter permease {ECO:0000313|EMBL:KGT73303.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japon
ABC transporter permease
13_1_40cm_4_scaffold_225_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(23218..24573)
DNA (1356bp) protein (452aa)
Putative sugar uptake ABC transporter periplasmic solute-binding protein id=2228895 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_4_scaffold_225_21
Halanaerobium hydrogeniformans, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24693..26054
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036B2BD6
SAF domain-containing protein
SAF domain protein {ECO:0000313|EMBL:ADQ15706.1}; TaxID=656519 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium hydrogeniformans (Ha
13_1_40cm_4_scaffold_225_22
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26015..26989
DNA (975bp) protein (325aa)
aryl-alcohol dehydrogenase (EC:1.1.1.91) Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
oxidoreductase (EC:1.-.-.-)
NADP-dependent aryl-alcohol dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000375978A
13_1_40cm_4_scaffold_225_23
R_RIF_OD1_09_54_12, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

27015..27881
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NQ78_9CAUL
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_54_12_curated
dolichol kinase
13_1_40cm_4_scaffold_225_24
Vibrio nigripulchritudo, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27812..28450)
DNA (639bp) protein (213aa)
Putative CDP-diglyceride synthetase n=4 Tax=Vibrio nigripulchritudo RepID=U4DKI4_9VIBR
Putative CDP-diglyceride synthetase {ECO:0000313|EMBL:CCN39906.1}; TaxID=1238441 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio nigripulchr
putative CDP-diglyceride synthetase
13_1_40cm_4_scaffold_225_25
unknown

Not on your lists

comp(28447..28962)
DNA (516bp) protein (172aa)

This feature has no annotations

Displaying 25 items

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