ggKbase home page

13_1_20cm_3_scaffold_2212

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_2212_1
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..489
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=Micromonospora RepID=E8S4U8_MICSL
Uncharacterized protein {ECO:0000313|EMBL:ADL46937.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strai
hypothetical protein
13_1_20cm_3_scaffold_2212_2
Nocardia vulneris, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

486..779
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Nocardia brasiliensis ATCC 700358 RepID=K0F7L0_9NOCA
Histidyl-tRNA synthetase {ECO:0000313|EMBL:KIA63705.1}; TaxID=1141657 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia vulneris.;"
hypothetical protein
13_1_20cm_3_scaffold_2212_3
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

796..1407
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI0003653DB9
Putative uncharacterized protein {ECO:0000313|EMBL:EEP69988.1}; TaxID=219305 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC
methyltransferase
13_1_20cm_3_scaffold_2212_4
unknown

Not on your lists

comp(1412..1639)
DNA (228bp) protein (76aa)

This feature has no annotations

13_1_20cm_3_scaffold_2212_5
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2360..4987
DNA (2628bp) protein (876aa)
hypothetical protein n=1 Tax=Streptomyces sp. 303MFCol5.2 RepID=UPI00035E7990 rbh
XRE family transcriptional regulator {ECO:0000313|EMBL:KDN17979.1}; TaxID=287986 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamy
XRE family transcriptional regulator
13_1_20cm_3_scaffold_2212_6
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5148..6347
DNA (1200bp) protein (400aa)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168};; Melibiase {ECO:0000256|RuleBase:RU361168}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonoc
Alpha-galactosidase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1I2F3_9PSEU rbh
alpha-galactosidase
13_1_20cm_3_scaffold_2212_7
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6417..7640)
DNA (1224bp) protein (408aa)
Glycosyl hydrolase family 88 n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q9A0_CATAD
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:ACU74246.1}; Flags: Precursor;; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispo
glycosyl hydrolase family protein
13_1_20cm_3_scaffold_2212_8
Kitasatospora cheerisanensis, Kitasatospora, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7892..9454)
DNA (1563bp) protein (521aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037D24C9
Uncharacterized protein {ECO:0000313|EMBL:KDN85574.1}; TaxID=1348663 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Kitasatospora.;" source="Kitasatospora cheerisanensis KCTC
hypothetical protein
13_1_20cm_3_scaffold_2212_9
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10108..11280)
DNA (1173bp) protein (391aa)
S-(Hydroxymethyl)glutathione dehydrogenase {ECO:0000313|EMBL:CCH17903.1}; EC=1.1.1.284 {ECO:0000313|EMBL:CCH17903.1};; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonospor
fdh; alcohol dehydrogenase GroES domain protein (EC:1.1.-.-)
S-(Hydroxymethyl)glutathione dehydrogenase n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L256_9ACTO
13_1_20cm_3_scaffold_2212_10
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11277..11732)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0L257_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH17904.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupa
hypothetical protein
13_1_20cm_3_scaffold_2212_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

11852..12622
DNA (771bp) protein (257aa)
DNA primase small subunit Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
DNA primase small subunit id=14629245 bin=bin8_Chloro species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin8_Chloro organism_group=Chloroflexi
DNA primase small subunit
13_1_20cm_3_scaffold_2212_12
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

12623..13129
DNA (507bp) protein (169aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI0003655174
DNA primase small subunit Tax=CSP1_4_Chloroflexi
DNA polymerase LigD
13_1_20cm_3_scaffold_2212_13
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13073..13288)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Rhodococcus opacus M213 RepID=K8X8P8_RHOOP
Uncharacterized protein {ECO:0000313|EMBL:EKT77186.1}; TaxID=1129896 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus M213.;"
hypothetical protein
13_1_20cm_3_scaffold_2212_14
Tetrasphaera japonica, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13285..14196)
DNA (912bp) protein (304aa)
sugar ABC transporter permease n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B65ED7 rbh
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CCH77086.1}; TaxID=1194083 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family
13_1_20cm_3_scaffold_2212_15
Rhodococcus jostii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14199..15245)
DNA (1047bp) protein (349aa)
ABC sugar transporter, permease component n=1 Tax=Rhodococcus sp. (strain RHA1) RepID=Q0SB31_RHOSR rbh
ABC sugar transporter, permease component {ECO:0000313|EMBL:ABG95255.1}; TaxID=101510 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus jostii (str
sugar ABC transporter permease
13_1_20cm_3_scaffold_2212_16
Sinomonas sp. MUSC 117, Sinomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15323..16594)
DNA (1272bp) protein (424aa)
ABC transporter, solute-binding protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2TAY4_LEIAQ rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KHL04792.1}; TaxID=1338436 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Sinomonas.;" source="Sinomonas sp. MUSC 117.;"
family 1 extracellular solute-binding protein
13_1_20cm_3_scaffold_2212_17
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16854..17873
DNA (1020bp) protein (340aa)
Transcriptional regulator, LacI family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X7V4_NAKMY rbh
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ACV80957.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (
LacI family transcriptional regulator rbh
13_1_20cm_3_scaffold_2212_18
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17863..19533)
DNA (1671bp) protein (557aa)
Serine/threonine protein kinase n=1 Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W499_9ACTO rbh
Serine/threonine protein kinase {ECO:0000313|EMBL:AGZ43847.1}; TaxID=1246995 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis
serine/threonine protein kinase rbh
13_1_20cm_3_scaffold_2212_19
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19810..20163
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI000360BAB8
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR61537.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micr
ArsR family transcriptional regulator
13_1_20cm_3_scaffold_2212_20
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20156..20884
DNA (729bp) protein (243aa)
arsenate reductase n=1 Tax=Salinispora tropica RepID=UPI00037BF795 rbh
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:ABP53113.1}; Flags: Precursor;; TaxID=369723 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salini
low molecular weight phosphotyrosine protein phosphatase rbh
13_1_20cm_3_scaffold_2212_21
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20899..21306
DNA (408bp) protein (136aa)
heat-shock protein HtpX n=1 Tax=Actinoplanes globisporus RepID=UPI00036A21A1
Heat-shock protein HtpX {ECO:0000313|EMBL:KHD75610.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
protein-tyrosine phosphatase, low molecular weight
13_1_20cm_3_scaffold_2212_22
Streptomyces tsukubaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21317..21580
DNA (264bp) protein (88aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1114943 species="Bacteria; Actino
Xylose isomerase n=1 Tax=Frankia sp. CN3 RepID=G6HGH4_9ACTO
xylose isomerase
Displaying 22 items

View Taxonomy