ggKbase home page

13_1_20cm_3_scaffold_479

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_479_1
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..322
DNA (321bp) protein (107aa)
cystathionine gamma-lyase (EC:4.4.1.1)
cystathionine gamma-lyase n=1 Tax=Salinispora pacifica RepID=UPI000363711A
Cys/Met metabolism PLP-dependent enzyme {ECO:0000313|EMBL:EWM65497.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora s
13_1_20cm_3_scaffold_479_2
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(258..2585)
DNA (2328bp) protein (776aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 155 RepID=UPI000360DE71 rbh
Protein kinase/LuxR family transcriptional regulator {ECO:0000313|EMBL:AIG76515.1}; TaxID=208439 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amyc
protein kinase/LuxR family transcriptional regulator
13_1_20cm_3_scaffold_479_3
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2698..3792)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JBW7_FRASU
Collagen alpha-1(I) chain {ECO:0000313|EMBL:EWM17673.1}; TaxID=345341 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
hypothetical protein
13_1_20cm_3_scaffold_479_4
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3792..4772)
DNA (981bp) protein (327aa)
ATPase {ECO:0000313|EMBL:AEV83923.1}; EC=3.6.4.3 {ECO:0000313|EMBL:AEV83923.1};; TaxID=134676 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinopl
ATPase (EC:3.6.4.3)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000360795A
13_1_20cm_3_scaffold_479_5
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4733..4936)
DNA (204bp) protein (68aa)
Cell division cycle protein n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WRR5_9ACTO
Cell division cycle protein {ECO:0000313|EMBL:EFL26185.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC
13_1_20cm_3_scaffold_479_6
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5133..6233
DNA (1101bp) protein (367aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000
D-alanine--D-alanine ligase n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KY69_9ACTO rbh
D-alanine--D-alanine ligase rbh
13_1_20cm_3_scaffold_479_7
unknown

Not on your lists

comp(6121..6516)
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_20cm_3_scaffold_479_8
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6558..7100)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KY70_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH16517.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupa
hypothetical protein
13_1_20cm_3_scaffold_479_9
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7113..7346)
DNA (234bp) protein (78aa)
AsnC family transcriptional regulator n=1 Tax=Longispora albida RepID=UPI0003732DB6
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:CCH16518.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora l
transcriptional regulator asnc-type-like protein
13_1_20cm_3_scaffold_479_10
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7490..8485
DNA (996bp) protein (332aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {E
thiamine monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAH1_VERMA rbh
13_1_20cm_3_scaffold_479_11
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8482..8952
DNA (471bp) protein (157aa)
acetyltransferase n=1 Tax=Salinispora arenicola RepID=UPI00037022F9
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABV97074.1}; TaxID=391037 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (str
N-acetyltransferase GCN5
13_1_20cm_3_scaffold_479_12
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8980..9171)
DNA (192bp) protein (64aa)
50S ribosomal protein L28 n=2 Tax=Micromonospora RepID=D9SXG9_MICAI
50S ribosomal protein L28 {ECO:0000256|HAMAP-Rule:MF_00373}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
50S ribosomal protein L28
13_1_20cm_3_scaffold_479_13
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9319..10881
DNA (1563bp) protein (521aa)
DAK2 domain fusion protein YloV n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KY75_9ACTO
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65511.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micr
dak2 domain fusion protein ylov
13_1_20cm_3_scaffold_479_14
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10878..13073
DNA (2196bp) protein (732aa)
ATP-dependent DNA helicase recG {ECO:0000313|EMBL:CCH16523.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCH16523.1};; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Microm
ATP-dependent DNA helicase recG n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KY76_9ACTO rbh
ATP-dependent DNA helicase RecG
13_1_20cm_3_scaffold_479_15
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13070..13624
DNA (555bp) protein (185aa)
Putative RNA methylase putative putative SAM-dependent methyltransferase domain n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KY78_9ACTO
Putative RNA methylase putative putative SAM-dependent methyltransferase domain {ECO:0000313|EMBL:CCH16525.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; M
methyltransferase
13_1_20cm_3_scaffold_479_16
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13621..14112
DNA (492bp) protein (164aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyr
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=2 Tax=Micromonospora RepID=D9SXH4_MICAI
13_1_20cm_3_scaffold_479_17
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14256..14750
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI000378B140
Uncharacterized protein {ECO:0000313|EMBL:CCH16527.1}; TaxID=1150864 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupa
hypothetical protein
13_1_20cm_3_scaffold_479_18
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14828..15433
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Micromonospora sp. (strain L5) RepID=E8S7R6_MICSL
Uncharacterized protein {ECO:0000313|EMBL:ADL44919.1}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strai
hypothetical protein
13_1_20cm_3_scaffold_479_19
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


15439..15612
DNA (174bp) protein (58aa)
50S ribosomal protein L32 n=1 Tax=Micromonospora sp. CNB394 RepID=UPI00037231E4
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=391037 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain
rpmF; 50S ribosomal protein L32
13_1_20cm_3_scaffold_479_20
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15628..16482
DNA (855bp) protein (285aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase
Phosphate acyltransferase n=1 Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9SXH8_MICAI
fatty acid synthesis plsX protein
13_1_20cm_3_scaffold_479_21
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16479..17171
DNA (693bp) protein (231aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
Ribonuclease 3 n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAI2_VERMA
ribonuclease iii
13_1_20cm_3_scaffold_479_22
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17153..18325
DNA (1173bp) protein (391aa)
Putative integral membrane protein {ECO:0000313|EMBL:AEV88197.1}; EC=2.4.1.- {ECO:0000313|EMBL:AEV88197.1};; TaxID=134676 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Acti
hypothetical protein n=1 Tax=Actinoplanes globisporus RepID=UPI00037434A7 rbh
hypothetical protein rbh
13_1_20cm_3_scaffold_479_23
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18327..19178
DNA (852bp) protein (284aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule
Formamidopyrimidine-DNA glycosylase n=1 Tax=Micromonospora lupini str. Lupac 08 RepID=I0KY85_9ACTO
putative formamidopyrimidine-DNA glycosylase rbh
13_1_20cm_3_scaffold_479_24
Streptomyces ipomoeae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19298..20665)
DNA (1368bp) protein (456aa)
Glycosyltransferase, group 1 family protein {ECO:0000313|EMBL:EKX69273.1}; EC=2.4.-.- {ECO:0000313|EMBL:EKX69273.1};; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetacea
hypothetical protein n=1 Tax=Catelliglobosispora koreensis RepID=UPI0003769B4C rbh
glycosyl transferase
13_1_20cm_3_scaffold_479_25
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20714..20974)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HIP2_ACTM4
Uncharacterized protein {ECO:0000313|EMBL:BAL92879.1}; TaxID=512565 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain
hypothetical protein
13_1_20cm_3_scaffold_479_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

21757..22797
DNA (1041bp) protein (347aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens RepID=F0Y525_AURAN
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
13_1_20cm_3_scaffold_479_27
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23234..25363
DNA (2130bp) protein (710aa)
chromosome partitioning protein Smc n=1 Tax=Micromonospora sp. CNB394 RepID=UPI00037D0670
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=644283 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aura
chromosome segregation protein smc
13_1_20cm_3_scaffold_479_28
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25398..26006
DNA (609bp) protein (203aa)
Signal recognition particle receptor FtsY n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FAJ4_VERMA
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; M
signal recognition particle-docking protein FtsY
Displaying 28 items

View Taxonomy