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13_1_20cm_3_scaffold_60

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_60_1
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..652)
-----------------
DNA (651bp)
protein (217aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI000366232A
Uncharacterized protein {ECO:0000313|EMBL:EIT72082.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboni
smeV; RND efflux system, membrane fusion protein CmeA
13_1_20cm_3_scaffold_60_2
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(874..1095)
-----------------
DNA (222bp)
protein (74aa)
Tax=CG_Rhodocyc_01
13_1_20cm_3_scaffold_60_trna_1
unknown

Not on your lists

955..1027
-----------------
DNA (73bp)
transferRNA
13_1_20cm_3_scaffold_60_3
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

1653..4256
-----------------
DNA (2604bp)
protein (868aa)
hypothetical protein n=1 Tax=Eudoraea adriatica RepID=UPI0003807198 rbh
Putative adenylate cyclase {ECO:0000313|EMBL:GAO43347.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumiba
serine/threonine protein kinase
13_1_20cm_3_scaffold_60_4
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4176..4526)
-----------------
DNA (351bp)
protein (117aa)
Cytoplasmic protein n=1 Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F8D1_VERMA
Cytoplasmic protein {ECO:0000313|EMBL:AEB44476.1}; TaxID=263358 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-0
13_1_20cm_3_scaffold_60_5
RifOxyA12_full_Deltaproteobacteria_61_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4584..7094)
-----------------
DNA (2511bp)
protein (837aa)
pre-mRNA-splicing ATP-dependent RNA helicase (EC:3.6.1.-) id=24486069 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
Putative helicase (EC:3.6.4.-)
type III restriction protein res subunit Tax=RifOxyA12_full_Deltaproteobacteria_61_11_curated
13_1_20cm_3_scaffold_60_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7335..8651
-----------------
DNA (1317bp)
protein (439aa)
ATPase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=Q6W2G7_RHISN rbh
ATPase {ECO:0000313|EMBL:AAQ87050.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (
ATPase
13_1_20cm_3_scaffold_60_7
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8960..9427
-----------------
DNA (468bp)
protein (156aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SUW5_JANMA
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR90131.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Jan
hypothetical protein
13_1_20cm_3_scaffold_60_8
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

Not on your lists

comp(9639..10781)
-----------------
DNA (1143bp)
protein (381aa)
Amidohydrolase 2 n=1 Tax=Sphingomonas sp. LH128 RepID=J8VYN0_9SPHN rbh
amidohydrolase 2 Tax=RBG_13_Caldithrix_44_9_curated
Amidohydrolase
13_1_20cm_3_scaffold_60_9
Burkholderia cenocepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10778..11563)
-----------------
DNA (786bp)
protein (262aa)
DeoR family regulatory protein n=3 Tax=Burkholderia cenocepacia RepID=B4ENL3_BURCJ
Transcriptional repressor of aga operon {ECO:0000313|EMBL:CDN65068.1}; TaxID=1055524 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderi
hypothetical protein
13_1_20cm_3_scaffold_60_10
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11563..13722)
-----------------
DNA (2160bp)
protein (720aa)
Putative alpha-galactosidase n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y1I2_9PROT
Putative alpha-galactosidase {ECO:0000313|EMBL:EGY00623.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrosp
glycoside hydrolase clan GH-D rbh
13_1_20cm_3_scaffold_60_11
RLO_Flavobacteria_35_11, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13995..14876
-----------------
DNA (882bp)
protein (294aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DW23_9BURK
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_35_11_curated
hypothetical protein
13_1_20cm_3_scaffold_60_12
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14873..16174
-----------------
DNA (1302bp)
protein (434aa)
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y1I4_9PROT rbh
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit {ECO:0000313|EMBL:EGY00625.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillace
tagatose-bisphosphate aldolase
13_1_20cm_3_scaffold_60_13
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16171..19233
-----------------
DNA (3063bp)
protein (1021aa)
TonB-dependent receptor n=1 Tax=Azospirillum amazonense Y2 RepID=G1XWK6_9PROT rbh
TonB-dependent receptor {ECO:0000313|EMBL:EGY02353.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirill
TonB-dependent receptor
13_1_20cm_3_scaffold_60_14
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19256..20440
-----------------
DNA (1185bp)
protein (395aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DBB3_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU81503.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG
putative galactosamine-6-phosphate isomerase
13_1_20cm_3_scaffold_60_15
Massilia timonae, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20437..21414
-----------------
DNA (978bp)
protein (326aa)
Uncharacterized protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DS06_9BURK rbh
Uncharacterized protein {ECO:0000313|EMBL:EKU81502.1}; TaxID=883126 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia timonae CCUG
badF/BadG/BcrA/BcrD ATPase family protein
13_1_20cm_3_scaffold_60_16
unknown

Not on your lists

comp(21939..22523)
-----------------
DNA (585bp)
protein (195aa)
Putative sulfite oxidase (Dehydrogenase) cytochrome subunit {ECO:0000313|EMBL:CPR19889.1}; EC=1.8.2.1 {ECO:0000313|EMBL:CPR19889.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteobacter
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKD7_AFIFE
putative cytochrome c
13_1_20cm_3_scaffold_60_17
unknown

Not on your lists

comp(22504..23925)
-----------------
DNA (1422bp)
protein (474aa)
Putative sulfite oxidase (Dehydrogenase) molybdoprotein subunit {ECO:0000313|EMBL:CPR19885.1}; EC=1.8.2.1 {ECO:0000313|EMBL:CPR19885.1};; TaxID=1578971 species="Bacteria; Proteobacteria; Alphaproteoba
molybdopterin binding oxidoreductase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B521EB
twin-arginine translocation pathway signal
13_1_20cm_3_scaffold_60_18
unknown

Not on your lists

comp(23936..24718)
-----------------
DNA (783bp)
protein (261aa)

This feature has no annotations

13_1_20cm_3_scaffold_60_19
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24916..25125
-----------------
DNA (210bp)
protein (70aa)
Transcriptional regulator, AbrB family n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RTQ9_ACCPU
AbrB family transcriptional regulator
Tax=GWA2_Gallionellales_60_18_curated
13_1_20cm_3_scaffold_60_20
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25125..25520
-----------------
DNA (396bp)
protein (132aa)
PilT protein domain protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CTM4_SIDLE
PilT Tax=GWA2_Rhodocyclales_65_20_curated
PilT
13_1_20cm_3_scaffold_60_21
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26136..29036)
-----------------
DNA (2901bp)
protein (967aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI00036A9C87 rbh
Type IV pilus biogenesis protein MshQ, putative {ECO:0000313|EMBL:ABA87656.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" s
mshQ; type IV pilus biogenesis protein MshQ
13_1_20cm_3_scaffold_60_22
R_Gallionellales_57_47, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29036..29437)
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein; K12286 MSHA biogenesis protein MshP Tax=RIFCSPLOWO2_02_FULL_Gallionellales_57_47_curated
hypothetical protein; K12286 MSHA biogenesis protein MshP id=12493305 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
mannose-sensitive agglutinin (MSHA) biogenesis protein MshP; signal peptide
13_1_20cm_3_scaffold_60_23

Not on your lists

comp(29434..30300)
-----------------
DNA (867bp)
protein (289aa)
Protein containing Prepilin-type cleavage/methylation n=1 Tax=mine drainage metagenome RepID=T1AEV9_9ZZZZ
Protein containing Prepilin-type cleavage/methylation {ECO:0000313|EMBL:EQD55148.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metageno
mshO; type IV pilus minor pilin MshO
13_1_20cm_3_scaffold_60_24
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30326..30772)
-----------------
DNA (447bp)
protein (149aa)
hypothetical protein n=1 Tax=Geopsychrobacter electrodiphilus RepID=UPI00036B21FC
Type IV pilus minor pilin MshD, putative {ECO:0000313|EMBL:ABA87653.1}; TaxID=338963 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="
mshD; type IV pilus minor pilin MshD
13_1_20cm_3_scaffold_60_25
RLO_Pseudomonas_59_9, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30775..31293)
-----------------
DNA (519bp)
protein (173aa)
hypothetical protein n=1 Tax=Pseudomonas stutzeri RepID=UPI0002FED180
hypothetical protein Tax=RifCSPlowO2_12_Pseudomonas_59_9_curated
hypothetical protein
13_1_20cm_3_scaffold_60_26
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31930..33159)
-----------------
DNA (1230bp)
protein (410aa)
Type II secretory pathway, component PulF n=2 Tax=mine drainage metagenome RepID=T1A4N9_9ZZZZ rbh
MSHA biogenesis protein MshG
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_1_20cm_3_scaffold_60_27
Nitrincola lacisaponensis, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33163..34950)
-----------------
DNA (1788bp)
protein (596aa)
Mannose-sensitive hemagglutinin E n=1 Tax=Marinobacter hydrocarbonoclasticus ATCC 49840 RepID=H8W4S4_MARHY rbh
MSHA biogenesis protein MshE {ECO:0000313|EMBL:KDE40085.1}; TaxID=267850 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola lacisaponensis.;"
type II secretion system protein E
13_1_20cm_3_scaffold_60_28
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34990..36618)
-----------------
DNA (1629bp)
protein (543aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI0003773C5E rbh
type II and III secretion system protein; K12282 MSHA biogenesis protein MshL Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
mshL; type IV pilus secretin MshL
13_1_20cm_3_scaffold_60_29
unknown

Not on your lists

comp(36620..36967)
-----------------
DNA (348bp)
protein (116aa)

This feature has no annotations

Displaying items 1-30 of 37 in total

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