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13_1_20cm_3_scaffold_1930

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_1930_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(1..1713)
DNA (1713bp) protein (571aa)
Acriflavin resistance protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XF75_9BACT rbh
Acriflavin resistance protein {ECO:0000313|EMBL:EEF61573.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pe
acriflavin resistance protein
13_1_20cm_3_scaffold_1930_2
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(1713..2954)
DNA (1242bp) protein (414aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000365F841 rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABJ88477.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus S
RND family efflux transporter MFP subunit
13_1_20cm_3_scaffold_1930_3
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(3602..4405)
DNA (804bp) protein (268aa)
PhoU family transcriptional regulator n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003673A21
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="
phosphate uptake regulator PhoU
13_1_20cm_3_scaffold_1930_4
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(4563..6368)
DNA (1806bp) protein (602aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Acidobac
Sensor protein yycG (EC:2.7.13.3) id=14625803 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_3_scaffold_1930_5
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(6358..7053)
DNA (696bp) protein (232aa)
response regulator Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
DNA-binding response regulator id=3240586 bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
DNA-binding response regulator
13_1_20cm_3_scaffold_1930_6
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(7242..9815)
DNA (2574bp) protein (858aa)
2-oxoglutarate dehydrogenase E1 component {ECO:0000313|EMBL:ABF42508.1}; EC=1.2.4.2 {ECO:0000313|EMBL:ABF42508.1};; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae;
2-oxoglutarate dehydrogenase E1 component n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKU2_KORVE
sucA; 2-oxoglutarate dehydrogenase E1
13_1_20cm_3_scaffold_1930_7
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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comp(9918..11249)
DNA (1332bp) protein (444aa)
glycosyl hydrolase family 5 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI0002886D47 rbh
Peptidase family protein {ECO:0000313|EMBL:AFL88501.1}; Flags: Precursor;; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus
peptidase family protein
13_1_20cm_3_scaffold_1930_8
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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comp(11273..13831)
DNA (2559bp) protein (853aa)
AMP-dependent synthetase and ligase n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMD0_KORVE
AMP-dependent synthetase and ligase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
AMP-dependent synthetase/ligase
13_1_20cm_3_scaffold_1930_9
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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14134..14790
DNA (657bp) protein (219aa)
radical SAM protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003782B08
Hopanoid biosynthesis associated radical SAM protein HpnH {ECO:0000313|EMBL:AEU35690.1}; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Gra
hopanoid biosynthesis associated radical SAM protein HpnH
13_1_20cm_3_scaffold_1930_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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14790..15182
DNA (393bp) protein (131aa)
radical SAM protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003782B08
Radical SAM domain protein {ECO:0000313|EMBL:ABJ84520.1}; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usit
radical SAM domain-containing protein
13_1_20cm_3_scaffold_1930_11
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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15179..15628
DNA (450bp) protein (150aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000371073A
Uncharacterized protein {ECO:0000313|EMBL:ACO32751.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain A
hypothetical protein
13_1_20cm_3_scaffold_1930_12
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

16183..16434
DNA (252bp) protein (84aa)
id=12554824 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
13_1_20cm_3_scaffold_1930_13
Methylovorus glucosotrophus, Methylovorus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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16539..16766
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Methylovorus sp. (strain SIP3-4) RepID=C6XE07_METSD
Uncharacterized protein {ECO:0000313|EMBL:ACT50782.1}; Flags: Precursor;; TaxID=582744 species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylovorus.;" source=
hypothetical protein
13_1_20cm_3_scaffold_1930_14
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

comp(16912..17847)
DNA (936bp) protein (312aa)
lipoyl synthase; K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
lipoate synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] id=14430284 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
lipoyl synthase
13_1_20cm_3_scaffold_1930_15
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

18053..18490
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q024F8_SOLUE
Uncharacterized protein {ECO:0000313|EMBL:ABJ83618.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source=
hypothetical protein
Displaying 15 items

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