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13_1_20cm_3_scaffold_5395

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_5395_1
Streptomyces venezuelae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..1080)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) RepID=F2R3D5_STRVP
Uncharacterized protein {ECO:0000313|EMBL:CCA55777.1}; TaxID=953739 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces venezuelae (strain ATCC
hypothetical protein
13_1_20cm_3_scaffold_5395_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1266..2687
DNA (1422bp) protein (474aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=GWA2_Rokubacteria_73_35_curated
Amidase id=4306251 bin=GWA2_Methylomirabilis_73_35 species=Pseudonocardia dioxanivorans genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidase
13_1_20cm_3_scaffold_5395_3
GWC2_CPR2_39_35, CPR2, Bacteria

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comp(2677..3675)
DNA (999bp) protein (333aa)
CHAP domain containing protein Tax=GWC2_CPR2_39_35
CHAP domain containing protein id=2900418 bin=GWC2_CPR2_39_35 species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation
putative CHAP domain containing protein
13_1_20cm_3_scaffold_5395_4
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3856..4167
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S3S6_ACTS5
PaaI protein {ECO:0000313|EMBL:BAQ47220.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticu
Thioesterase superfamily protein
13_1_20cm_3_scaffold_5395_5
CSP1_5_NC10, NC10, Bacteria

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4350..5222
DNA (873bp) protein (291aa)
alpha/beta hydrolase fold protein Tax=CSP1_5_NC10
alpha/beta hydrolase fold protein id=14430298 bin=bin3_NC10 species=Pseudomonas aeruginosa genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
alpha/beta hydrolase fold protein
13_1_20cm_3_scaffold_5395_6
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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comp(5219..6097)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I203_CALAS
Uncharacterized protein {ECO:0000313|EMBL:BAL99290.1}; TaxID=926550 species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 1
hypothetical protein
13_1_20cm_3_scaffold_5395_7
RifOxyB12_full_Anaerolinea_60_12_curated, Anaerolineae, Chloroflexi, Bacteria

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6119..7312
DNA (1194bp) protein (398aa)
two-component sensor histidine kinase; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] Tax=RifOxyB12_full_Anaerolinea_60_12_curated
Histidine kinase n=1 Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CW80_TRURR
histidine kinase
13_1_20cm_3_scaffold_5395_8
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

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7266..7769
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Nitrolancetus hollandicus Lb RepID=I4ENE0_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:CCF86203.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source
hypothetical protein
13_1_20cm_3_scaffold_5395_9
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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comp(7782..8960)
DNA (1179bp) protein (393aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L209_THERP rbh
13_1_20cm_3_scaffold_5395_10
unknown

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8991..10046
DNA (1056bp) protein (352aa)

This feature has no annotations

13_1_20cm_3_scaffold_5395_11
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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10074..10475
DNA (402bp) protein (134aa)
hypothetical protein; K09457 7-cyano-7-deazaguanine reductase [EC:1.7.1.13] Tax=RBG_13_Deltaproteobacteria_65_10_curated
queF; 7-cyano-7-deazaguanine reductase (EC:1.7.1.-)
NADPH-dependent 7-cyano-7-deazaguanine reductase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TZN5_9CHLR
13_1_20cm_3_scaffold_5395_12
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

10556..11572
DNA (1017bp) protein (339aa)
Pyruvate dehydrogenase E1 component subunit alpha {ECO:0000256|RuleBase:RU361139}; EC=1.2.4.1 {ECO:0000256|RuleBase:RU361139};; TaxID=525904 species="Bacteria; Thermobaculum.;" source="Thermobaculum t
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1)
Pyruvate dehydrogenase (Acetyl-transferring) E1 component, alpha subunit n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDK6_THET1 rbh
13_1_20cm_3_scaffold_5395_13

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11572..12552
DNA (981bp) protein (327aa)
Transketolase central region n=1 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CDK7_THET1
Marine sediment metagenome DNA, contig: S01H4_L00282 {ECO:0000313|EMBL:GAG56708.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
transketolase
13_1_20cm_3_scaffold_5395_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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12553..13971
DNA (1419bp) protein (473aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidete
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SHQ9_RHOMR
pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
13_1_20cm_3_scaffold_5395_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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14058..14657
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TK64_9PROT
TetR family transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
TetR family transcriptional regulator
13_1_20cm_3_scaffold_5395_16
Gimesia maris, Gimesia, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

14738..15322
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CBI0_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EDL57907.1}; TaxID=344747 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Gimesia.;" source="Gimesia maris DSM 8797.;"
beta-lactamase
13_1_20cm_3_scaffold_5395_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(15334..15963)
DNA (630bp) protein (210aa)
FAD-binding dehydrogenase n=1 Tax=Glaciibacter superstes RepID=UPI0003B3F386
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein {ECO:0000313|EMBL:AHG89759.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
fumarate reductase/succinate dehydrogenase flavoprotein domain protein
Displaying 17 items

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