ggKbase home page

13_1_20cm_3_scaffold_5954

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_3_scaffold_5954_1
unknown

Not on your lists

1..189
DNA (189bp) protein (63aa)

This feature has no annotations

13_1_20cm_3_scaffold_5954_2
Frankia sp. QA3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(198..1076)
DNA (879bp) protein (293aa)
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase n=1 Tax=Frankia sp. QA3 RepID=I8QJ83_9ACTO
Flavin-dependent oxidoreductase, F420-dependent methylene-tetrahydromethanopterin reductase {ECO:0000313|EMBL:EIV92417.1}; TaxID=710111 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Fran
hypothetical protein
13_1_20cm_3_scaffold_5954_3
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1173..1655
DNA (483bp) protein (161aa)
Putative MarR-family regulatory protein n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2AT56_STRRD
Putative MarR-family regulatory protein {ECO:0000313|EMBL:ACZ84732.1}; TaxID=479432 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosp
MarR family transcriptional regulator
13_1_20cm_3_scaffold_5954_4
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1688..2644)
DNA (957bp) protein (319aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI00035DA0DB
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:AHH21614.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
alpha/beta hydrolase family protein
13_1_20cm_3_scaffold_5954_5
unknown

Not on your lists

comp(2666..3307)
DNA (642bp) protein (214aa)

This feature has no annotations

13_1_20cm_3_scaffold_5954_6
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3889..4506)
DNA (618bp) protein (206aa)
Putative transcriptional regulator, TetR family n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QFU5_CATAD
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:ACU70922.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispo
TetR family transcriptional regulator
13_1_20cm_3_scaffold_5954_7
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4587..5309)
DNA (723bp) protein (241aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=D9XBQ7_STRVR rbh
Short-chain dehydrogenase {ECO:0000313|EMBL:KFG01015.1}; TaxID=1930 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
dehydrogenase
13_1_20cm_3_scaffold_5954_8
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5572..6099
DNA (528bp) protein (176aa)
Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QG05_CATAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU70982.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DS
hypothetical protein rbh
13_1_20cm_3_scaffold_5954_9
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6565..9372
DNA (2808bp) protein (936aa)
Putative sensor with HAMP domain n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7M8_CATAD rbh
Putative sensor with HAMP domain {ECO:0000313|EMBL:ACU72221.1}; Flags: Precursor;; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenul
sensor with HAMP domain rbh
13_1_20cm_3_scaffold_5954_10
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9373..9651
DNA (279bp) protein (93aa)
Roadblock/LC7 family protein n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7M9_CATAD
Roadblock/LC7 family protein {ECO:0000313|EMBL:ACU72222.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (stra
Roadblock/LC7 family protein
13_1_20cm_3_scaffold_5954_11
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9728..10318
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7N0_CATAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ACU72223.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DS
hypothetical protein rbh
13_1_20cm_3_scaffold_5954_12
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10431..11660
DNA (1230bp) protein (410aa)
Extracellular ligand-binding receptor n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7N1_CATAD rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ACU72224.1}; Flags: Precursor;; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Ca
extracellular ligand-binding receptor rbh
13_1_20cm_3_scaffold_5954_13
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11786..12685
DNA (900bp) protein (300aa)
Inner-membrane translocator n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7N2_CATAD rbh
Inner-membrane translocator {ECO:0000313|EMBL:ACU72225.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strai
inner-membrane translocator rbh
13_1_20cm_3_scaffold_5954_14
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12848..13684
DNA (837bp) protein (279aa)
Inner-membrane translocator n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7N3_CATAD rbh
Inner-membrane translocator {ECO:0000313|EMBL:ACU72226.1}; Flags: Precursor;; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispor
inner-membrane translocator rbh
13_1_20cm_3_scaffold_5954_15
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13681..14379
DNA (699bp) protein (233aa)
ABC transporter related n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7N4_CATAD rbh
ABC transporter related {ECO:0000313|EMBL:ACU72227.1}; Flags: Precursor;; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora ac
ABC transporter rbh
13_1_20cm_3_scaffold_5954_16
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14379..15134
DNA (756bp) protein (252aa)
ABC transporter related n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7Q7N5_CATAD rbh
ABC transporter related {ECO:0000313|EMBL:ACU72228.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DS
ABC transporter rbh
13_1_20cm_3_scaffold_5954_17
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15368..15913)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Frankia alni (strain ACN14a) RepID=Q0RJB4_FRAAA
Uncharacterized protein {ECO:0000313|EMBL:KJE25204.1}; TaxID=1502723 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
hypothetical protein
13_1_20cm_3_scaffold_5954_18
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16208..16774)
DNA (567bp) protein (189aa)
Endoglucanase {ECO:0000256|RuleBase:RU361153}; EC=3.2.1.4 {ECO:0000256|RuleBase:RU361153};; Flags: Precursor;; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Cate
Glycoside hydrolase family 5 n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QI33_CATAD
glycoside hydrolase family protein
Displaying 18 items

View Taxonomy