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13_1_20cm_3_scaffold_11226_3

Organism: 13_1_20CM_3_Actinobacteria_70_7

partial RP 34 / 55 MC: 5 BSCG 31 / 51 MC: 3 ASCG 8 / 38 MC: 1
Location: 2043..2621

Top 3 Functional Annotations

Value Algorithm Source
ECF sigma factor n=1 Tax=Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602) RepID=E2Q3D3_STRC2 similarity UNIREF
DB: UNIREF100
  • Identity: 53.9
  • Coverage: 165.0
  • Bit_score: 173
  • Evalue 1.60e-40
ECF sigma factor {ECO:0000313|EMBL:EFL00207.1}; Flags: Fragment;; TaxID=591157 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. (strain UNIPROT
DB: UniProtKB
  • Identity: 52.8
  • Coverage: 176.0
  • Bit_score: 173
  • Evalue 2.30e-40
RNA polymerase, sigma-24 subunit, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 53.8
  • Coverage: 173.0
  • Bit_score: 170
  • Evalue 6.60e-40

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Taxonomy

Streptomyces sp. SPB78 → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 579
ATGACCGCGTCCGGGCCTGACCGCGATGTCCACTGCCACCTAGACATCGTCGCCAGCGCCCAGCGCGGAGACCCCGACGCCTTCCGCGCGCTCTACCGCACCCACTCCCCGCGTCTCCTCGGCTACCTGAGAACCCTGGTCGGCGAGACCGACGCCGAGGACGTGGCGTCCGAGACCTGGGCCGCCATCCACACCGCGCTGCCCGGCTACCACCAGCACCGCGCCGACTTCCGGACCTGGTCCACCGCCATCGCGCGCAACCACGCCATCAGCCATCTGCGCTATCGCGGGGCCCGCCCTGCGATCCCGCTGCCACCGGAGGCGCTGCCGCACCGGCCCAGCCCGACGGACACCGAACACGACGCCGCCGAGTCCATCCGCACCGCCGGCACGCTGGCGCTGCTGAGCGAGCTGCCGCGTAGCCAGGCCGCCGCCGTGCTGCTGTGCGTGGTGATCGGGATGGACGCGGTGACGGCGGCGCGGGTGCTTCGCAAGCAGCCGAATGCGGTGCGGACCGCTGTGCACCGGGGGCTCAAGGCTTTGCGGCTGCGGCTTGCTGGGCGTGAGTCCTTTGGCTGA
PROTEIN sequence
Length: 193
MTASGPDRDVHCHLDIVASAQRGDPDAFRALYRTHSPRLLGYLRTLVGETDAEDVASETWAAIHTALPGYHQHRADFRTWSTAIARNHAISHLRYRGARPAIPLPPEALPHRPSPTDTEHDAAESIRTAGTLALLSELPRSQAAAVLLCVVIGMDAVTAARVLRKQPNAVRTAVHRGLKALRLRLAGRESFG*