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13_1_20cm_4_scaffold_643

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_643_1
unknown

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265..726
DNA (462bp) protein (154aa)

This feature has no annotations

13_1_20cm_4_scaffold_643_2
Ricinus communis, Ricinus, Malpighiales, rosids, Streptophyta, Viridiplantae

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919..2088
DNA (1170bp) protein (390aa)
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TEN1_RICCO
Putative uncharacterized protein {ECO:0000313|EMBL:EEF25684.1}; TaxID=3988 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gun
hypothetical protein
13_1_20cm_4_scaffold_643_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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2230..2733
DNA (504bp) protein (168aa)
protein kinase (EC:2.7.11.1) Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_643_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2876..3883)
DNA (1008bp) protein (336aa)
alias=16ft_combo_ws3_scaffold_11554_18 Tax=RBG_16_RIF_WS3X_71_46_curated
alias=16ft_combo_ws3_scaffold_11554_18 id=24440502 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
13_1_20cm_4_scaffold_643_5
Mastigocladus laminosus, Mastigocladus, Stigonematales, Cyanobacteria, Bacteria

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comp(3922..4857)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Fischerella sp. PCC 9339 RepID=UPI00037308F6
Uncharacterized protein {ECO:0000313|EMBL:KIY12307.1}; TaxID=1594576 species="Bacteria; Cyanobacteria; Stigonematales; Mastigocladus.;" source="Mastigocladus laminosus UU774.;"
hypothetical protein
13_1_20cm_4_scaffold_643_6
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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5114..6157
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI0003659B94
Uncharacterized protein {ECO:0000313|EMBL:EST34272.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp
phosphoesterase
13_1_20cm_4_scaffold_643_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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6451..7023
DNA (573bp) protein (191aa)
hypothetical protein; K00551 phosphatidylethanolamine N-methyltransferase [EC:2.1.1.17] Tax=GWC2_Gemmatimonadetes_71_10_curated
Phosphatidylethanolaminen-methyltransferase-lik E protein n=1 Tax=Angomonas deanei RepID=S9V0R7_9TRYP
phosphatidylethanolaminen-methyltransferase-lik e protein
13_1_20cm_4_scaffold_643_8
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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7116..7709
DNA (594bp) protein (198aa)
DinB-like domain protein
DinB-like domain protein {ECO:0000313|EMBL:AHG88849.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_4_scaffold_643_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(7714..8970)
DNA (1257bp) protein (419aa)
diguanylate cyclase Tax=CSP1_6_Rokubacteria
diguanylate cyclase id=14625981 bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_643_trna_1
unknown

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9083..9155
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_643_trna_2
unknown

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9169..9240
DNA (72bp)
transferRNA
13_1_20cm_4_scaffold_643_trna_3
unknown

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9303..9375
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_643_10
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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9400..10068
DNA (669bp) protein (223aa)
OmpR family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEF7_GEMAT
Transcriptional regulator domain-containing protein {ECO:0000313|EMBL:AHG89496.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
transcriptional regulator domain-containing protein
13_1_20cm_4_scaffold_643_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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10079..11338
DNA (1260bp) protein (420aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Histidine kinase n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C1S0_SPHTD
ATP-binding region ATPase domain protein
13_1_20cm_4_scaffold_643_12
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(11440..14499)
DNA (3060bp) protein (1020aa)
Cation/multidrug efflux pump n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EWC8_9BACT
Acriflavin resistance protein {ECO:0000313|EMBL:AHG89501.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
acriflavin resistance protein
13_1_20cm_4_scaffold_643_13
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(14496..15563)
DNA (1068bp) protein (356aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VKE4_CAUST
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AHG89500.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
efflux transporter, RND family, MFP subunit
13_1_20cm_4_scaffold_643_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15560..16777)
DNA (1218bp) protein (406aa)
Metal ion efflux outer membrane factor protein family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R9T0_PHEZH
Outer membrane efflux protein {ECO:0000313|EMBL:AHG89498.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
outer membrane efflux protein
13_1_20cm_4_scaffold_643_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

16921..17220
DNA (300bp) protein (100aa)
putative neuraminidase
Putative neuraminidase {ECO:0000313|EMBL:AHG93068.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Displaying 18 items

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