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13_1_20cm_4_scaffold_84

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_84_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1..534)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=Q84CW3_9BACT
Uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
13_1_20cm_4_scaffold_84_2
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

717..1100
DNA (384bp) protein (128aa)
Chaperonin, 10 kDa n=1 Tax=uncultured marine bacterium Ant4D5 RepID=Q2PXZ9_9BACT
groES; putative 10 kDa chaperonin Tax=RBG_16_Gemmatimonadetes_66_8_curated
Chaperonin Cpn10
13_1_20cm_4_scaffold_84_3
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

1104..1421
DNA (318bp) protein (106aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_84_4
R_OD1_Uhrbacteria_63_20, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

1505..2686
DNA (1182bp) protein (394aa)
DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] Tax=RIFCSPHIGHO2_01_FULL_OD1_Uhrbacteria_63_20_curated
ATP-dependent DNA helicase, RecQ family n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LD25_9FIRM
recQ; ATP-dependent DNA helicase
13_1_20cm_4_scaffold_84_5
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2806..4068
DNA (1263bp) protein (421aa)
Aminotransferase class V {ECO:0000313|EMBL:ACL61852.1}; EC=2.6.1.45 {ECO:0000313|EMBL:ACL61852.1};; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriacea
aminotransferase class V protein (EC:2.6.1.45)
Aminotransferase class V n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IK67_METNO
13_1_20cm_4_scaffold_84_6
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4065..5039
DNA (975bp) protein (325aa)
Malyl-CoA lyase {ECO:0000313|EMBL:EYD78103.1}; EC=4.1.3.24 {ECO:0000313|EMBL:EYD78103.1};; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubel
UPI0003CEE324 related cluster n=1 Tax=unknown RepID=UPI0003CEE324 rbh
citrate lyase beta subunit
13_1_20cm_4_scaffold_84_7
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5042..6217
DNA (1176bp) protein (392aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
Malate-CoA ligase [ADP-forming] beta chain (EC:6.2.1.9)
malate--CoA ligase subunit beta n=1 Tax=Rhodocyclaceae RepID=UPI00037CFC58 rbh
13_1_20cm_4_scaffold_84_8
Burkholderia sacchari, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6214..7128
DNA (915bp) protein (305aa)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=159450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkho
succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SKX0_METPP
13_1_20cm_4_scaffold_84_9
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7125..8111
DNA (987bp) protein (329aa)
2-hydroxyacid dehydrogenase n=1 Tax=Methylococcus capsulatus RepID=UPI0002F10899
2-hydroxyacid dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
2-hydroxyacid dehydrogenase
13_1_20cm_4_scaffold_84_10
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8108..10858
DNA (2751bp) protein (917aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkh
Phosphoenolpyruvate carboxylase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCZ3_METS4 rbh
phosphoenolpyruvate carboxylase
13_1_20cm_4_scaffold_84_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

10964..12184
DNA (1221bp) protein (407aa)
acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A933_GEMAT
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:AHG90877.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_20cm_4_scaffold_84_12
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(12186..14351)
DNA (2166bp) protein (722aa)
Prolyl oligopeptidase, serine peptidase, MEROPS family S09A n=1 Tax=Moorea producens 3L RepID=F4XIY9_9CYAN rbh
Prolyl endopeptidase {ECO:0000313|EMBL:KIF32544.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
prolyl endopeptidase
13_1_20cm_4_scaffold_84_13
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

14582..16168
DNA (1587bp) protein (529aa)
cafA; ribonuclease G (EC:3.1.-.-); K08301 ribonuclease G [EC:3.1.26.-] Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A932_GEMAT
ribonuclease, Rne/Rng family
13_1_20cm_4_scaffold_84_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


16203..16523
DNA (321bp) protein (107aa)
50S ribosomal protein L21 n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A931_GEMAT
rplU; 50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L21
13_1_20cm_4_scaffold_84_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists


16532..16795
DNA (264bp) protein (88aa)
50S ribosomal protein L27 n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0UHP8_CYAP2
50S ribosomal protein L27; K02899 large subunit ribosomal protein L27 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
50S ribosomal protein L27
13_1_20cm_4_scaffold_84_16
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(16832..18040)
DNA (1209bp) protein (403aa)
Imidazolonepropionase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCT3_PHEZH rbh
Amidohydrolase {ECO:0000313|EMBL:AHG90871.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
amidohydrolase
13_1_20cm_4_scaffold_84_17
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(18037..21411)
DNA (3375bp) protein (1125aa)
amidohydrolase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5895F
Amidohydrolase {ECO:0000313|EMBL:AHG90870.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
amidohydrolase
13_1_20cm_4_scaffold_84_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(21441..22805)
DNA (1365bp) protein (455aa)
Peptidase S16B family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AEN4_GEMAT
Predicted Zn-dependent peptidase {ECO:0000313|EMBL:CDM66642.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
peptidase S16B family protein
13_1_20cm_4_scaffold_84_19
unknown

Not on your lists

comp(22802..23548)
DNA (747bp) protein (249aa)

This feature has no annotations

13_1_20cm_4_scaffold_84_20
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23517..24389)
DNA (873bp) protein (291aa)
Amidohydrolase 2 n=1 Tax=mine drainage metagenome RepID=T1BXN0_9ZZZZ
amidohydrolase; K07045 Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
amidohydrolase 2
13_1_20cm_4_scaffold_84_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(24389..25207)
DNA (819bp) protein (273aa)
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157); K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] Tax=RBG_16_Gemmatimonadetes_66_8_curated
3-hydroxybutyryl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LTX8_HALO1
13_1_20cm_4_scaffold_84_22
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(25243..25935)
DNA (693bp) protein (231aa)
glycerophosphoryl diester phosphodiesterase family protein; K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Glycerophosphoryl diester phosphodiesterase family protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A928_GEMAT
glycerophosphoryl diester phosphodiesterase family protein
13_1_20cm_4_scaffold_84_23
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(25932..27056)
DNA (1125bp) protein (375aa)
PhaF protein; K15512 benzoyl-CoA 2,3-dioxygenase component B [EC:1.14.12.21] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Benzoyl-CoA oxygenase component B id=1975393 bin=GWD2_Deltaproteobacteria_55_8 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
benzoyl-CoA oxygenase subunit beta
13_1_20cm_4_scaffold_84_24
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(27056..27811)
DNA (756bp) protein (252aa)
short chain enoyl-CoA hydratase (EC:4.2.1.17)
enoyl-CoA hydratase n=1 Tax=Duganella zoogloeoides RepID=UPI00037ABE1D
enoyl-CoA hydratase/isomerase Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_20cm_4_scaffold_84_25
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(27812..28669)
DNA (858bp) protein (286aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase n=1 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67RI8_SYMTH
13_1_20cm_4_scaffold_84_26
Sphingobium sp. YBL2, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28639..28878)
DNA (240bp) protein (80aa)
Beta-ketoadipyl CoA thiolase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SJH6_9SPHN
Beta-ketoadipyl CoA thiolase {ECO:0000313|EMBL:AJR23652.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium
beta-ketoadipyl CoA thiolase
13_1_20cm_4_scaffold_84_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(28875..30302)
DNA (1428bp) protein (476aa)
Aldehyde Dehydrogenase n=1 Tax=candidate division ZIXI bacterium RBG-1 RepID=T0MJ64_9BACT
NAD-dependent aldehyde dehydrogenase Tax=RBG_16_Gemmatimonadetes_66_8_curated
NAD-dependent aldehyde dehydrogenase
13_1_20cm_4_scaffold_84_28
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(30299..31114)
DNA (816bp) protein (272aa)
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.17) Tax=RBG_16_Gemmatimonadetes_66_8_curated
3-hydroxybutyryl-CoA dehydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=uncultured bacterium A1Q1_fos_2037 RepID=L7W1I7_9BACT
13_1_20cm_4_scaffold_84_29
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31121..31714)
DNA (594bp) protein (198aa)
transcriptional regulator Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
TetR-family transcriptional regulator id=1804082 bin=GWD2_Deltaproteobacteria_55_8 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
TetR family transcriptional regulator
13_1_20cm_4_scaffold_84_30
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

31889..32440
DNA (552bp) protein (184aa)
RNA polymerase sigma factor n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A927_GEMAT
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_16_Gemmatimonadetes_66_8_curated
RNA polymerase ECF-type sigma factor
Displaying items 1-30 of 68 in total

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