ggKbase home page

13_1_20cm_4_scaffold_100

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_100_1
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

98..673
-----------------
DNA (576bp)
protein (192aa)
gmk; guanylate kinase; K00942 guanylate kinase [EC:2.7.4.8] Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H3_9BACT
13_1_20cm_4_scaffold_100_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

670..1302
-----------------
DNA (633bp)
protein (211aa)
Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:EDY18379.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EDY18379.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;"
Phosphopantothenoylcysteine decarboxylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H4_9BACT
phosphopantothenate--cysteine ligase
13_1_20cm_4_scaffold_100_3
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1380..1955
-----------------
DNA (576bp)
protein (192aa)
coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase (EC:4.1.1.36 6.3.2.5)
hypothetical protein n=1 Tax=Bacillus sp. L1(2012) RepID=UPI000347A210
Uncharacterized protein {ECO:0000313|EMBL:BAH06314.1}; TaxID=583346 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain NBRC 1
13_1_20cm_4_scaffold_100_4
unknown

Not on your lists

2398..2562
-----------------
DNA (165bp)
protein (55aa)

This feature has no annotations

13_1_20cm_4_scaffold_100_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2603..2989
-----------------
DNA (387bp)
protein (129aa)
Inositol-phosphate phosphatase {ECO:0000313|EMBL:EDY18380.1}; EC=3.1.3.25 {ECO:0000313|EMBL:EDY18380.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Cht
inositol-phosphate phosphatase (EC:3.1.3.25)
Inositol-phosphate phosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H5_9BACT
13_1_20cm_4_scaffold_100_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3158..3634
-----------------
DNA (477bp)
protein (159aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H6_9BACT
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {E
13_1_20cm_4_scaffold_100_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

3717..5141
-----------------
DNA (1425bp)
protein (475aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:00
Cysteine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H7_9BACT
putative cysteinyl-tRNA synthetase
13_1_20cm_4_scaffold_100_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

5203..5883
-----------------
DNA (681bp)
protein (227aa)
Putative UDP-N-acetylglucosamine diphosphorylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5H8_9BACT
Putative UDP-N-acetylglucosamine diphosphorylase {ECO:0000313|EMBL:EDY18383.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin42
gcd1; nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunit
13_1_20cm_4_scaffold_100_trna_3
unknown

Not on your lists

comp(5926..6010)
-----------------
DNA (85bp)
transferRNA
13_1_20cm_4_scaffold_100_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(6099..6929)
-----------------
DNA (831bp)
protein (277aa)
Chlorite dismutase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0H2_9BACT
Chlorite dismutase {ECO:0000313|EMBL:EDY19834.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
ywfI; heme peroxidase involved in anaerobic stress response
13_1_20cm_4_scaffold_100_10
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7009..7920)
-----------------
DNA (912bp)
protein (304aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D126_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20038.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_4_scaffold_100_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

7950..9137
-----------------
DNA (1188bp)
protein (396aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoni
Aminomethyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D125_9BACT rbh
glycine cleavage system T protein
13_1_20cm_4_scaffold_100_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

9124..9501
-----------------
DNA (378bp)
protein (126aa)
Glycine cleavage system H protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D124_9BACT
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
gcvH; glycine cleavage system H protein (lipoate-binding)
13_1_20cm_4_scaffold_100_13
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9514..10146
-----------------
DNA (633bp)
protein (211aa)
Uncharacterized protein n=1 Tax=Paenibacillus mucilaginosus (strain KNP414) RepID=F8FGZ6_PAEMK
Bacteriocin-protection protein {ECO:0000313|EMBL:KFF24390.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobac
hypothetical protein
13_1_20cm_4_scaffold_100_14

Not on your lists

comp(10158..10883)
-----------------
DNA (726bp)
protein (242aa)
Methyltransferase domain protein {ECO:0000313|EMBL:AIA16489.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Putative uncharacterized protein id=2209327 bin=GWB2_Elusimicrobium_63_22 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
hypothetical protein
13_1_20cm_4_scaffold_100_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

11051..11368
-----------------
DNA (318bp)
protein (106aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 small subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2Z7_9BACT
exodeoxyribonuclease VII small subunit
13_1_20cm_4_scaffold_100_16
Methylacidiphilum fumariolicum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

11349..13292
-----------------
DNA (1944bp)
protein (648aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746178
dxs; deoxyxylulose-5-phosphate synthase
13_1_20cm_4_scaffold_100_17
unknown

Not on your lists

comp(13308..13442)
-----------------
DNA (135bp)
protein (45aa)

This feature has no annotations

13_1_20cm_4_scaffold_100_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13961..14449)
-----------------
DNA (489bp)
protein (163aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CVV5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21547.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_4_scaffold_100_19
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

14617..15111
-----------------
DNA (495bp)
protein (165aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI000375D987
bcp; Peroxiredoxin Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
alkyl hydroperoxide reductase
13_1_20cm_4_scaffold_100_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

15206..18103
-----------------
DNA (2898bp)
protein (966aa)
Aconitate hydratase 1 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWZ4_9BACT rbh
Aconitate hydratase 1 {ECO:0000313|EMBL:EDY21314.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
aconitate hydratase 1
13_1_20cm_4_scaffold_100_21
Myxococcus xanthus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18092..18808)
-----------------
DNA (717bp)
protein (239aa)
Putative uncharacterized protein n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D932_MYXXD
Uncharacterized protein {ECO:0000313|EMBL:ABF90260.1}; TaxID=246197 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococ
hypothetical protein
13_1_20cm_4_scaffold_100_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(19174..20811)
-----------------
DNA (1638bp)
protein (546aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUH3_9BACT
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EDY22211.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavu
nrfG; TPR repeats containing protein
13_1_20cm_4_scaffold_100_trna_1
unknown

Not on your lists

21033..21104
-----------------
DNA (72bp)
transferRNA
13_1_20cm_4_scaffold_100_trna_2
unknown

Not on your lists

21187..21260
-----------------
DNA (74bp)
transferRNA
13_1_20cm_4_scaffold_100_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

21318..22418
-----------------
DNA (1101bp)
protein (367aa)
ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase (EC:1.1.1.193 3.5.4.26)
Riboflavin biosynthesis protein RibD n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D449_9BACT
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:EDY18650.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_100_24
unknown

Not on your lists

22470..22718
-----------------
DNA (249bp)
protein (83aa)

This feature has no annotations

13_1_20cm_4_scaffold_100_25
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(22822..23130)
-----------------
DNA (309bp)
protein (103aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D737_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17688.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_100_26
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(23330..23683)
-----------------
DNA (354bp)
protein (118aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D736_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY17687.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_100_27
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(23744..25315)
-----------------
DNA (1572bp)
protein (524aa)
RNA polymerase sigma factor SigA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CWV6_9BACT
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
RpoD family RNA polymerase sigma-70 subunit
Displaying 30 items

View Taxonomy