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13_1_20cm_4_scaffold_1122

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1122_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(1..453)
DNA (453bp) protein (151aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=497964 species="Bacteria; Verruco
Leucine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T4_9BACT
leucyl-tRNA synthetase
13_1_20cm_4_scaffold_1122_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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649..1251
DNA (603bp) protein (201aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T3_9BACT
Ham1 family protein
13_1_20cm_4_scaffold_1122_3
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(1248..1727)
DNA (480bp) protein (160aa)
Biopolymer transport protein n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E0E8_METI4
Biopolymer transport protein {ECO:0000313|EMBL:ACD84377.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.
exbD; biopolymer transport protein
13_1_20cm_4_scaffold_1122_4

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comp(1747..2373)
DNA (627bp) protein (209aa)
TonB family protein n=1 Tax=Desulfurivibrio alkaliphilus (strain DSM 19089 / UNIQEM U267 / AHT2) RepID=D6Z3X7_DESAT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49402.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
TonB family protein
13_1_20cm_4_scaffold_1122_5
Methylacidiphilum infernorum, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

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comp(2381..2818)
DNA (438bp) protein (146aa)
Biopolymer transport protein n=1 Tax=Methylacidiphilum infernorum (isolate V4) RepID=B3E0E8_METI4
Biopolymer transport protein {ECO:0000313|EMBL:ACD84377.1}; TaxID=481448 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia; Methylacidiphilales; Methylacidiphilaceae; Methylacidiphilum.
exbD; biopolymer transport protein
13_1_20cm_4_scaffold_1122_6
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2829..3833)
DNA (1005bp) protein (335aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKR3_9BACT
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EEF59556.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source
tolQ; biopolymer transport protein, MotA/TolQ/ExbB family
13_1_20cm_4_scaffold_1122_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(4022..4855)
DNA (834bp) protein (278aa)
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase {ECO:0000313|EMBL:EEF58719.1}; EC=4.1.1.68 {ECO:0000313|EMBL:EEF58719.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verruco
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XN57_9BACT
2-keto-4-pentenoate hydratase
13_1_20cm_4_scaffold_1122_8
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4889..5650)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E0S7_9GAMM
Putative uncharacterized protein {ECO:0000313|EMBL:EGV31699.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodoco
hypothetical protein
13_1_20cm_4_scaffold_1122_9

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comp(5709..7769)
DNA (2061bp) protein (687aa)
hypothetical protein n=1 Tax=Nevskia ramosa RepID=UPI0003B6BECD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49069.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_4_scaffold_1122_10

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comp(7877..9760)
DNA (1884bp) protein (628aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002F597DA
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49070.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
13_1_20cm_4_scaffold_1122_11
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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comp(9804..10619)
DNA (816bp) protein (272aa)
Transcriptional regulator, TrmB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZJ9_9BACT
Transcriptional regulator, TrmB {ECO:0000313|EMBL:EDY20163.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
transcriptional regulator
Displaying 11 items

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