ggKbase home page

13_1_20cm_4_scaffold_215

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_215_1
Geobacillus stearothermophilus, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1..1176)
DNA (1176bp) protein (392aa)
isocitrate lyase n=1 Tax=Alicyclobacillus pohliae RepID=UPI000365CC3E
Isocitrate lyase {ECO:0000313|EMBL:EZP78723.1}; TaxID=1295642 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus stearothermophilus NUB3621.;"
Gex interacting protein 7
13_1_20cm_4_scaffold_215_2
Chloroflexus aurantiacus, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(1160..2770)
DNA (1611bp) protein (537aa)
Malate synthase {ECO:0000256|RuleBase:RU000555}; EC=2.3.3.9 {ECO:0000256|RuleBase:RU000555};; Flags: Precursor;; TaxID=324602 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexin
malate synthase (EC:2.3.3.9)
Malate synthase n=2 Tax=Chloroflexus RepID=A9WG14_CHLAA rbh
13_1_20cm_4_scaffold_215_3
unknown

Not on your lists

comp(3002..3223)
DNA (222bp) protein (74aa)

This feature has no annotations

13_1_20cm_4_scaffold_215_4
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3449..4540
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000370AE84
Oxidoreductase {ECO:0000313|EMBL:AGC42264.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stip
oxidoreductase
13_1_20cm_4_scaffold_215_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(4549..4833)
DNA (285bp) protein (95aa)
Thioredoxin n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0M0_9BACT
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
trxA; thioredoxin
13_1_20cm_4_scaffold_215_6
Pluralibacter gergoviae, Pluralibacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4838..5305)
DNA (468bp) protein (156aa)
Cell division protein ZipA homolog {ECO:0000256|HAMAP-Rule:MF_00509, ECO:0000256|SAAS:SAAS00054614}; TaxID=61647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacter
13_1_20cm_4_scaffold_215_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5403..6890)
DNA (1488bp) protein (496aa)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZR4_9BACT
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase
30S ribosomal protein S12 methylthiotransferase
13_1_20cm_4_scaffold_215_8
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6927..7898)
DNA (972bp) protein (324aa)
Putative uncharacterized protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVW2_9BACT
transcriptional regulator; K15539 cytoskeleton protein RodZ Tax=CG_Rhodocyc_01
transcriptional regulator
13_1_20cm_4_scaffold_215_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7916..10396)
DNA (2481bp) protein (827aa)
Cell divisionFtsK/SpoIIIE n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZR6_9BACT rbh
Cell divisionFtsK/SpoIIIE {ECO:0000313|EMBL:EDY20230.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
cell division protein FtsK
13_1_20cm_4_scaffold_215_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

10778..12199
DNA (1422bp) protein (474aa)
TGF-beta receptor type I/II extracellular region n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSQ7_OPITP rbh
TGF-beta receptor type I/II extracellular region {ECO:0000313|EMBL:ACB74808.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae
TGF-beta receptor type I/II extracellular protein
13_1_20cm_4_scaffold_215_11
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

12207..13934
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZQQ1_OPITP rbh
Uncharacterized protein {ECO:0000313|EMBL:ACB77802.1}; Flags: Precursor;; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strai
hypothetical protein
13_1_20cm_4_scaffold_215_12
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(13965..15230)
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW49_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY21641.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_4_scaffold_215_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(15246..15842)
DNA (597bp) protein (199aa)
Peptidase M15A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW48_9BACT
Peptidase M15A {ECO:0000313|EMBL:EDY21640.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
Peptidase M15A
13_1_20cm_4_scaffold_215_14
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(15839..16693)
DNA (855bp) protein (285aa)
Beta-lactamase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW47_9BACT
Beta-lactamase {ECO:0000313|EMBL:AHG91207.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
beta-lactamase
13_1_20cm_4_scaffold_215_15
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

16738..17391
DNA (654bp) protein (218aa)
Peptidase C26 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBG3_9BACT
Peptidase C26 {ECO:0000313|EMBL:EDY16253.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
glutamine amidotransferase
13_1_20cm_4_scaffold_215_16
Methylacidiphilum kamchatkense, Methylacidiphilum, Methylacidiphilales, Verrucomicrobia, Bacteria

Not on your lists

comp(17614..18009)
DNA (396bp) protein (132aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase {ECO:0000256|PIRNR:PIRNR006113}; EC=4.-.-.- {ECO:0000256|PIRNR:PIRNR006113};; TaxID=1202785 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia
6-carboxy-5,6,7,8-tetrahydropterin synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745B0C
6-pyruvoyl-tetrahydropterin synthase
13_1_20cm_4_scaffold_215_17
unknown

Not on your lists

comp(18078..18296)
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_20cm_4_scaffold_215_18
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(18235..18897)
DNA (663bp) protein (221aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=uncultured delta proteobacterium RepID=H5SJE1_9DELT
radical-activating enzyme, radical SAM superfamily Tax=CG_Ignavi_01
radical-activating enzyme, radical SAM superfamily
13_1_20cm_4_scaffold_215_19
Leptospira noguchii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

19126..19776
DNA (651bp) protein (217aa)
Succinate dehydrogenase cytochrome B subunit, b558 family n=4 Tax=Leptospira RepID=M6HV41_9LEPT
Succinate dehydrogenase cytochrome B subunit, b558 family {ECO:0000313|EMBL:EQA69514.1}; TaxID=1001595 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira
succinate:quinone oxidoreductase (SQR)-like protein
13_1_20cm_4_scaffold_215_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

19862..21439
DNA (1578bp) protein (526aa)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit {ECO:0000313|EMBL:EDY18605.1}; EC=1.3.99.1 {ECO:0000313|EMBL:EDY18605.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartoba
sdhA; succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase or fumarate reductase, flavoprotein subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D502_9BACT
13_1_20cm_4_scaffold_215_21
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21406..21648
DNA (243bp) protein (81aa)
Succinate dehydrogenase {ECO:0000313|EMBL:KGH45385.1}; EC=1.3.5.1 {ECO:0000313|EMBL:KGH45385.1};; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacte
sdhA; succinate dehydrogenase subunit A (EC:1.3.99.1)
Succinate dehydrogenase subunit A n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4ET42_MODMB
13_1_20cm_4_scaffold_215_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

21704..22063
DNA (360bp) protein (120aa)
S23 ribosomal protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D004_9BACT
S23 ribosomal protein {ECO:0000313|EMBL:EDY20318.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
S23 ribosomal protein
13_1_20cm_4_scaffold_215_23
R_Omnitrophica_50_24, Omnitrophica, Bacteria

Not on your lists

22106..22861
DNA (756bp) protein (252aa)
sdhB; succinate dehydrogenase/fumarate reductase iron-sulfur subunit; K00240 succinate dehydrogenase iron-sulfur subunit [EC:1.3.99.1] Tax=RIFCSPLOWO2_01_FULL_Omnitrophica_50_24_curated
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D4Z9_9BACT
succinate dehydrogenase/fumarate reductase iron-sulfur subunit
13_1_20cm_4_scaffold_215_24
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

22914..24059
DNA (1146bp) protein (382aa)
DNA polymerase III, delta subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1F9_9BACT rbh
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EDY19571.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
DNA polymerase III subunit delta
13_1_20cm_4_scaffold_215_25
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(24076..24507)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D099_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20413.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
13_1_20cm_4_scaffold_215_26
unknown

Not on your lists

24594..25196
DNA (603bp) protein (201aa)

This feature has no annotations

13_1_20cm_4_scaffold_215_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

25469..25729
DNA (261bp) protein (87aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=RBG_16_Gemmatimonadetes_66_8_curated
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Verrucomicrobium spinosum RepID=UPI000174537E
Displaying 27 items

View Taxonomy