ggKbase home page

13_1_20cm_4_scaffold_2999

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2999_1
unknown

Not on your lists

2..220
DNA (219bp) protein (73aa)

This feature has no annotations

13_1_20cm_4_scaffold_2999_2
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

319..1290
DNA (972bp) protein (324aa)
Transcriptional regulator, AraC family n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGC1_PHEZH
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACG77245.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source
AraC family transcriptional regulator
13_1_20cm_4_scaffold_2999_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

1465..2481
DNA (1017bp) protein (339aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGC1_SINAD
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:AGA28327.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomyc
transcriptional regulator
13_1_20cm_4_scaffold_2999_4
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

2478..2918
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MH06_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CBE69037.1}; TaxID=671143 species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
hypothetical protein
13_1_20cm_4_scaffold_2999_5
unknown

Not on your lists

2987..3196
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_20cm_4_scaffold_2999_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3510..4085
DNA (576bp) protein (192aa)
UPI0003CE42A8 related cluster n=1 Tax=unknown RepID=UPI0003CE42A8
Uncharacterized protein {ECO:0000313|EMBL:AKC85467.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
hypothetical protein
13_1_20cm_4_scaffold_2999_7
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(4135..5271)
DNA (1137bp) protein (379aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCC0_9BACT
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:EEF62588.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedospha
alcohol dehydrogenase
13_1_20cm_4_scaffold_2999_8
Pseudomonas sp. GM55, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5276..6121
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI0003627200
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EJM68651.1}; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" sou
oxidoreductase
13_1_20cm_4_scaffold_2999_9
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

6224..6682
DNA (459bp) protein (153aa)
Phosphoesterase PA-phosphatase related protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VHB5_9CYAN
Phosphoesterase PA-phosphatase related protein {ECO:0000313|EMBL:AFZ06919.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatori
phosphoesterase PA-phosphatase related protein
13_1_20cm_4_scaffold_2999_10
Synechococcus sp. PCC 6312, Synechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

6672..7310
DNA (639bp) protein (213aa)
RHS repeat-associated core domain protein n=1 Tax=Synechococcus sp. (strain ATCC 27167 / PCC 6312) RepID=K9RWK0_SYNP3
RHS repeat-associated core domain protein {ECO:0000313|EMBL:AFY61916.1}; TaxID=195253 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus.;" source="Synechococcus sp.
RHS repeat-associated core domain-containing protein
13_1_20cm_4_scaffold_2999_11
unknown

Not on your lists

comp(7287..7382)
DNA (96bp) protein (32aa)

This feature has no annotations

13_1_20cm_4_scaffold_2999_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

7398..7871
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003765560
Uncharacterized protein {ECO:0000313|EMBL:ABF40454.1}; Flags: Precursor;; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacte
hypothetical protein
13_1_20cm_4_scaffold_2999_13
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(7912..8784)
DNA (873bp) protein (291aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3H6_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
putative peptidoglycan-binding domain-containing protein
13_1_20cm_4_scaffold_2999_14
Bacteroidales bacterium CF, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8934..9233)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Bacteroidales bacterium CF RepID=U5Q479_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGY53362.1}; TaxID=1400053 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales.;" source="Bacteroidales bacterium CF.;"
hypothetical protein
Displaying 14 items

View Taxonomy