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13_1_20cm_4_scaffold_631

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_631_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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1..1041
DNA (1041bp) protein (347aa)
AAA ATPase central domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XID4_9BACT
AAA ATPase central domain protein {ECO:0000313|EMBL:EEF60395.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" so
ATPase AAA
13_1_20cm_4_scaffold_631_2
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1148..2014
DNA (867bp) protein (289aa)
ubiA; prenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1ZWU7_9BACT
4-hydroxybenzoate polyprenyltransferase
13_1_20cm_4_scaffold_631_3
uncultured Verrucomicrobia bacterium, Verrucomicrobia, Bacteria

Not on your lists

comp(2143..2445)
DNA (303bp) protein (101aa)
ribose 5-phosphate isomerase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745EE4
Sugar phosphate isomerase RpiB/LacA/LacB family {ECO:0000313|EMBL:ACO70887.1}; TaxID=156588 species="Bacteria; Verrucomicrobia; environmental samples.;" source="uncultured Verrucomicrobia bacterium.;"
ribose 5-phosphate isomerase
13_1_20cm_4_scaffold_631_4
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(2563..3516)
DNA (954bp) protein (318aa)
Chaperone protein DnaJ n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XFY3_9BACT
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivis
chaperone DnaJ domain-containing protein
13_1_20cm_4_scaffold_631_5
GWF2_WOR_2_43_52_curated, WOR-2, Bacteria

Not on your lists

3865..4497
DNA (633bp) protein (211aa)
uracil-DNA glycosylase superfamily protein; K03648 uracil-DNA glycosylase [EC:3.2.2.27] Tax=GWF2_WOR_2_43_52_curated
Uracil-DNA glycosylase superfamily id=2883685 bin=GWF2_OP3_43_52 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_OP3_43_52 organism_group=OP3 (Omnitrophica) organism_desc=Same as C2_44_8
uracil-DNA glycosylase superfamily protein
13_1_20cm_4_scaffold_631_6
GWF2_Lentisphaerae_49_21_curated, Lentisphaerae, Bacteria

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4817..5968
DNA (1152bp) protein (384aa)
sulfatase Tax=GWF2_Lentisphaerae_49_21_curated
Sulfatase id=3708237 bin=GWF2_Lentisphaerae_49_21 species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Lentisphaerae_49_21 organism_group=Lentisphaerae organism_desc=Very large genome: good +
arylsulfatase A family protein
13_1_20cm_4_scaffold_631_7
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6094..6696)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00036FCF75
Putative membrane protein {ECO:0000313|EMBL:CAN96937.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium
hypothetical protein
13_1_20cm_4_scaffold_631_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6759..8153)
DNA (1395bp) protein (465aa)
56kDa selenium binding protein (SBP56) n=1 Tax=Chthonomonas calidirosea T49 RepID=S0EZ77_9BACT rbh
Selenium-binding protein 1 {ECO:0000313|EMBL:ETX06669.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
56kDa selenium binding protein (SBP56)
13_1_20cm_4_scaffold_631_9
Alteromonas australica, Alteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8289..9023)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NY80_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AIF99657.1}; TaxID=589873 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alteromonas.;" source="Alteromonas austra
hypothetical protein
13_1_20cm_4_scaffold_631_10
Nitrosococcus oceani, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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9083..9694
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3JBR5_NITOC
Uncharacterized protein {ECO:0000313|EMBL:ABA57731.1}; TaxID=323261 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus oceani (
hypothetical protein
13_1_20cm_4_scaffold_631_11
Microcystis aeruginosa, Microcystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(9698..10435)
DNA (738bp) protein (246aa)
Genome sequencing data, contig C323 n=1 Tax=Microcystis aeruginosa PCC 9808 RepID=I4HVZ9_MICAE
Uncharacterized protein {ECO:0000313|EMBL:GAL93403.1}; TaxID=449439 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Microcystis.;" source="Microcystis aeruginosa NIES-44.;"
13_1_20cm_4_scaffold_631_12
Leptolyngbya sp. PCC 7376, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10419..11087)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00036DAC80
Uncharacterized protein {ECO:0000313|EMBL:AFY36736.1}; TaxID=111781 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 7376.;"
hypothetical protein
13_1_20cm_4_scaffold_631_trna_1
unknown

Not on your lists

11128..11200
DNA (73bp)
transferRNA
13_1_20cm_4_scaffold_631_13
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(11309..12010)
DNA (702bp) protein (234aa)
REG-2-like, HAD superfamily (Subfamily IA) hydrolase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYQ0_9BACT
REG-2-like, HAD superfamily (Subfamily IA) hydrolase {ECO:0000313|EMBL:EDY20591.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ell
haloacid dehalogenase
13_1_20cm_4_scaffold_631_14
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12135..12800
DNA (666bp) protein (222aa)
hemolysin III family channel protein; K11068 hemolysin III Tax=CSP1_8_Deltaproteobacteria
hemolysin III family channel protein; K11068 hemolysin III id=14624112 bin=bin5_DeltaP species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=bin5_DeltaP organism_group=Deltaproteobacteria
hemolysin-3
13_1_20cm_4_scaffold_631_15
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12880..13980
DNA (1101bp) protein (367aa)
Transcriptional regulator, Lrp/AsnC family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XE91_9BACT rbh
Transcriptional regulator, Lrp/AsnC family {ECO:0000313|EMBL:EEF61982.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedospha
lrp; AsnC family transcriptional regulator
13_1_20cm_4_scaffold_631_16
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14041..14649)
DNA (609bp) protein (203aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
Biotin/acetyl-CoA-carboxylase ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7V7_9BACT
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978
13_1_20cm_4_scaffold_631_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14651..15547)
DNA (897bp) protein (299aa)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:EDY17481.1}; EC=2.4.2.19 {ECO:0000313|EMBL:EDY17481.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" so
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D7V8_9BACT
13_1_20cm_4_scaffold_631_18
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(15841..16752)
DNA (912bp) protein (304aa)
5'-3' exonuclease n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D756_9BACT rbh
5'-3' exonuclease {ECO:0000313|EMBL:EDY17707.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
exo; 5'-3' exonuclease
13_1_20cm_4_scaffold_631_19
unknown

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16783..17070
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_20cm_4_scaffold_631_20
unknown

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17042..17791
DNA (750bp) protein (250aa)

This feature has no annotations

13_1_20cm_4_scaffold_631_21
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17855..18526)
DNA (672bp) protein (224aa)
Uncharacterized protein {ECO:0000313|EMBL:KGQ18243.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdone
13_1_20cm_4_scaffold_631_22
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


18655..19692
DNA (1038bp) protein (346aa)
recA protein (EC:3.6.3.8); K03553 recombination protein RecA Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
recA protein (EC:3.6.3.8)
Protein RecA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CV92_9BACT rbh
13_1_20cm_4_scaffold_631_23
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(19730..20143)
DNA (414bp) protein (138aa)
superoxide dismutase, copper/zinc binding; K04565 Cu/Zn superoxide dismutase [EC:1.15.1.1] Tax=RBG_16_Zixibacteria_53_22_curated
sodC; superoxide dismutase (Cu-Zn) (EC:1.15.1.1)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003637DFA
13_1_20cm_4_scaffold_631_24
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

20308..20817
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000371F7C8
Uncharacterized protein {ECO:0000313|EMBL:ACO33713.1}; TaxID=240015 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain A
hypothetical protein
13_1_20cm_4_scaffold_631_25
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists


20831..21100
DNA (270bp) protein (90aa)
alaS; alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=GWF2_Verrucomicrobia_62_7_curated
alanyl-tRNA synthetase (EC:6.1.1.7)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00035E6FC3
Displaying 26 items

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