ggKbase home page

13_1_20cm_4_scaffold_82

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_82_1
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists


1..1452
DNA (1452bp) protein (484aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=497964 species="Bacteria; Verruco
Leucine--tRNA ligase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D8T4_9BACT
leucyl-tRNA synthetase
13_1_20cm_4_scaffold_82_2
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1467..1925
DNA (459bp) protein (153aa)
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel Tax=RBG_13_Deltaproteobacteria_52_11b_curated
mscL; large-conductance mechanosensitive channel; K03282 large conductance mechanosensitive channel id=14429302 bin=bin3_NC10 species=Pelodictyon phaeoclathratiforme genus=Pelodictyon taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=bin3_NC10 organism_group=NC10
Large-conductance mechanosensitive channel
13_1_20cm_4_scaffold_82_3
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2020..2577
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAL6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY16534.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
3D domain-containing protein
13_1_20cm_4_scaffold_82_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

2611..3582
DNA (972bp) protein (324aa)
UDP-glucose 4-epimerase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZF4_9BACT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EDY20118.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
galE; UDP-glucose 4-epimerase
13_1_20cm_4_scaffold_82_5
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3669..4652)
DNA (984bp) protein (328aa)
Glycosyl transferase family 9 n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CYF5_9BACT rbh
Glycosyl transferase family 9 {ECO:0000313|EMBL:EDY20496.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
rfaF; ADP-heptose:LPS heptosyltransferase
13_1_20cm_4_scaffold_82_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(4750..5172)
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017457FE
Uncharacterized protein {ECO:0000313|EMBL:EDY18905.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_4_scaffold_82_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(5369..6787)
DNA (1419bp) protein (473aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (
MiaB family RNA modification protein (EC:1.3.1.74)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3P9_9BACT rbh
13_1_20cm_4_scaffold_82_8
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

6914..7792
DNA (879bp) protein (293aa)
S-methyl-5'-thioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.28 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioadenosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; TaxID
mtaP; 5'-methylthioadenosine phosphorylase (EC:2.4.2.28)
S-methyl-5'-thioadenosine phosphorylase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZS2_9BACT
13_1_20cm_4_scaffold_82_9
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(7879..9063)
DNA (1185bp) protein (395aa)
8-amino-7-oxononanoate synthase {ECO:0000256|SAAS:SAAS00087543}; EC=2.3.1.47 {ECO:0000256|SAAS:SAAS00087543};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source
8-amino-7-oxononanoate synthase (EC:2.3.1.47)
8-amino-7-oxononanoate synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D346_9BACT rbh
13_1_20cm_4_scaffold_82_10
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

9108..9512
DNA (405bp) protein (135aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IQZ7_9BACT
Glyoxalase {ECO:0000313|EMBL:AHF90444.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
glyoxalase
13_1_20cm_4_scaffold_82_11

Not on your lists

9538..10074
DNA (537bp) protein (179aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 89 RepID=E3T6A2_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ADC35846.1}; TaxID=698393 species="Bacteria; environmental samples.;" source="uncultured bacterium 89.;"
Protein of unknown function DUF2127
13_1_20cm_4_scaffold_82_12
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10177..11373)
DNA (1197bp) protein (399aa)
group 1 glycosyl transferase; K13057 trehalose synthase [EC:2.4.1.245] id=24577423 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin rbh
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADE14825.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus hal
group 1 glycosyl transferase
13_1_20cm_4_scaffold_82_13
unknown

Not on your lists

11462..11722
DNA (261bp) protein (87aa)

This feature has no annotations

13_1_20cm_4_scaffold_82_14
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

11800..12648
DNA (849bp) protein (283aa)
(2R)-phospho-3-sulfolactate synthase ComA Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
phosphosulfolactate synthase id=14632245 bin=bin9_gal15 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
(2R)-phospho-3-sulfolactate synthase ComA
13_1_20cm_4_scaffold_82_15
Leptolyngbya sp. PCC 7375, Leptolyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(12768..13415)
DNA (648bp) protein (216aa)
Dienelactone hydrolase-like enzyme n=1 Tax=Leptolyngbya sp. PCC 7375 RepID=K9EGX1_9CYAN
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:EKU96449.1}; TaxID=102129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Leptolyngbya.;" source="Leptolyngbya sp. PCC 73
dienelactone hydrolase-like enzyme
13_1_20cm_4_scaffold_82_16
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(13492..14814)
DNA (1323bp) protein (441aa)
Erythromycin esterase-like enzyme n=1 Tax=Microcoleus sp. PCC 7113 RepID=K9WFT4_9CYAN rbh
Erythromycin esterase-like enzyme {ECO:0000313|EMBL:AFZ19280.1}; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus sp. PCC 7113
erythromycin esterase-like enzyme
13_1_20cm_4_scaffold_82_17
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(14817..15488)
DNA (672bp) protein (224aa)
Phosphoribosyltransferase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D499_9BACT
Phosphoribosyltransferase {ECO:0000313|EMBL:EDY18700.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
phosphoribosyltransferase
13_1_20cm_4_scaffold_82_18
CG_Ignavi_01, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(15671..19054)
DNA (3384bp) protein (1128aa)
peptidase S41; K08676 tricorn protease [EC:3.4.21.-] Tax=CG_Ignavi_01
protease id=8267303 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
peptidase S41
13_1_20cm_4_scaffold_82_trna_1
unknown

Not on your lists

comp(19704..19790)
DNA (87bp)
transferRNA
13_1_20cm_4_scaffold_82_19
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

20216..23371
DNA (3156bp) protein (1052aa)
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent {ECO:0000313|EMBL:EDY19934.1}; EC=1.17.4.1 {ECO:0000313|EMBL:EDY19934.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobact
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0S2_9BACT rbh
ribonucleoside-diphosphate reductase
13_1_20cm_4_scaffold_82_20
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

23572..24867
DNA (1296bp) protein (432aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCF1_9BACT
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:EDY15900.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
acyl-CoA dehydrogenase domain-containing protein
13_1_20cm_4_scaffold_82_21

Not on your lists

25248..26246
DNA (999bp) protein (333aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomerore
hypothetical protein n=2 Tax=unclassified Verrucomicrobia RepID=UPI000366E5D6
ilvC; Ketol-acid reductoisomerase
13_1_20cm_4_scaffold_82_22
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(26678..29131)
DNA (2454bp) protein (818aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUG2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY22200.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
13_1_20cm_4_scaffold_82_23
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(29128..30081)
DNA (954bp) protein (318aa)
Excinuclease ABC, A subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUG1_9BACT
UvrABC system protein A {ECO:0000256|SAAS:SAAS00088996}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
excinuclease ABC subunit A
Displaying 24 items

View Taxonomy