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13_1_20cm_4_scaffold_132

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_132_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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1..2040
DNA (2040bp) protein (680aa)
TRAP C4-dicarboxylate transport system permease DctM Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Putative TRAP-type C4-dicarboxylate transport system, large permease component id=4900377 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Pusillimonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
TRAP C4-dicarboxylate transport system permease DctM
13_1_20cm_4_scaffold_132_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2072..3412
DNA (1341bp) protein (447aa)
amidase Tax=GWA2_Rokubacteria_73_35_curated
amidase id=14430439 bin=bin3_NC10 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
amidase
13_1_20cm_4_scaffold_132_3
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

3529..4980
DNA (1452bp) protein (484aa)
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] id=14430442 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10 rbh
succinate-semialdehyde dehydrogenase
13_1_20cm_4_scaffold_132_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5011..5181
DNA (171bp) protein (57aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative regulatory protein, FmdB family id=4900375 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_132_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5195..5719
DNA (525bp) protein (175aa)
Pfpi family intracellular protease; K05520 protease I [EC:3.2.-.-] Tax=GWA2_Rokubacteria_73_35_curated
Intracellular protease, PfpI family id=4900374 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Pfpi family intracellular protease
13_1_20cm_4_scaffold_132_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

5804..6094
DNA (291bp) protein (97aa)
prevent-host-death protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Prevent-host-death protein id=4592692 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
prevent-host-death protein
13_1_20cm_4_scaffold_132_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6091..6477
DNA (387bp) protein (129aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein id=14626718 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_132_8
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(6465..7115)
DNA (651bp) protein (217aa)
id=14625572 Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
id=14625572 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_132_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

7303..8673
DNA (1371bp) protein (457aa)
branched chain amino acid ABC transporter substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
livK; branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein id=14625571 bin=bin7_NC10_sister species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
branched chain amino acid ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_132_10
R_NC10_66_22, NC10, Bacteria

Not on your lists

8757..11024
DNA (2268bp) protein (756aa)
solute binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
Putative uncharacterized protein id=14625570 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10 rbh
hypothetical protein
13_1_20cm_4_scaffold_132_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

11024..11899
DNA (876bp) protein (292aa)
livH-3; branched-chain amino acid ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
livH-3; branched-chain amino acid ABC transporter permease id=14625569 bin=bin7_NC10_sister species=Natrinema versiforme genus=Natrinema taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
inner-membrane translocator
13_1_20cm_4_scaffold_132_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

11896..12909
DNA (1014bp) protein (338aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625568 bin=bin7_NC10_sister species=Starkeya novella genus=Starkeya taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_1_20cm_4_scaffold_132_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

12911..13666
DNA (756bp) protein (252aa)
livG3; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
Branched-chain amino acid ABC transporter ATP-binding protein id=5022300 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
branched-chain amino acid ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_132_14
R_NC10_66_22, NC10, Bacteria

Not on your lists

13669..14400
DNA (732bp) protein (244aa)
ABC transporter ATP-binding protein, putative branched-chain amino acid transport; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
ABC transporter ATP-binding protein id=14625566 bin=bin7_NC10_sister species=Bordetella parapertussis genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_132_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14491..15171
DNA (681bp) protein (227aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative uncharacterized protein id=4306933 bin=GWF2_Methylomirabilis_70_14 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_132_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15329..17092
DNA (1764bp) protein (588aa)
carbamoyl transferase Tax=GWA2_Rokubacteria_73_35_curated
Carbamoyl transferase id=4759402 bin=GWC2_Methylomirabilis_70_16 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
carbamoyl transferase, NodU family
13_1_20cm_4_scaffold_132_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17089..18498
DNA (1410bp) protein (470aa)
putative amidase protein; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PUTATIVE AMIDASE PROTEIN id=4323718 bin=GWC2_Methylomirabilis_70_16 species=Mesorhizobium loti genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
putative amidase protein
13_1_20cm_4_scaffold_132_18
Saccharomonospora glauca, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18972..20567
DNA (1596bp) protein (532aa)
Cytosine deaminase-like metal-dependent hydrolase n=1 Tax=Saccharomonospora glauca K62 RepID=I1D1P3_9PSEU rbh
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:EIE98867.1}; Flags: Precursor;; TaxID=928724 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonos
Amidohydrolase family protein
13_1_20cm_4_scaffold_132_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20616..21485)
DNA (870bp) protein (290aa)
acriflavin resistance protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acriflavin resistance protein id=4900369 bin=GWA2_Methylomirabilis_73_35 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acriflavin resistance protein
Displaying 19 items

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