ggKbase home page

13_1_20cm_4_scaffold_1374

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1374_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..727)
DNA (726bp) protein (242aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3301620 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_1374_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(786..1082)
DNA (297bp) protein (99aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4799901 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1374_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1163..1423)
DNA (261bp) protein (87aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2507307 bin=GWA2_Elusimicrobia_69_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_20cm_4_scaffold_1374_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1477..2298)
DNA (822bp) protein (274aa)
Putative ABC transporter permease protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR4_9BACT
ABC transporter permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter permease
13_1_20cm_4_scaffold_1374_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2295..3167)
DNA (873bp) protein (291aa)
Putative ABC transporter (Permease protein) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR5_9BACT
thuF; putative sugar ABC transporter permease; K02025 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
thuF; putative sugar ABC transporter permease
13_1_20cm_4_scaffold_1374_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3164..4429)
DNA (1266bp) protein (422aa)
Putative sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFR6_9BACT
sugar ABC transporter periplasmic sugar-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sugar ABC transporter periplasmic sugar-binding protein
13_1_20cm_4_scaffold_1374_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4445..5083)
DNA (639bp) protein (213aa)
OmpA/MotB domain protein Tax=GWC2_Rokubacteria_70_16_curated
OmpA/MotB domain protein id=4034147 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
OmpA/MotB domain protein
13_1_20cm_4_scaffold_1374_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5142..6758)
DNA (1617bp) protein (539aa)
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1,4-alpha-glucan branching enzyme GlgB id=4799905 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trehalose synthase/maltokinase
13_1_20cm_4_scaffold_1374_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6733..8412)
DNA (1680bp) protein (560aa)
trehalose synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Trehalose synthase id=4882695 bin=GWC2_Methylomirabilis_70_24 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
trehalose synthase
13_1_20cm_4_scaffold_1374_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8474..9574)
DNA (1101bp) protein (367aa)
putative glycosyl transferase, family 2 (EC:2.4.-.-)
glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Glycosyl transferase, family 2 id=5032667 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1374_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9571..10761)
DNA (1191bp) protein (397aa)
group 1 glycosyl transferase; K13057 trehalose synthase [EC:2.4.1.245] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=5032668 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
13_1_20cm_4_scaffold_1374_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10758..11423)
DNA (666bp) protein (222aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=5032669 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytoplasmic protein
13_1_20cm_4_scaffold_1374_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11460..12233)
DNA (774bp) protein (258aa)
beta-phosphoglucomutase hydrolase (EC:2.4.1.216) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
beta-phosphoglucomutase hydrolase (EC:2.4.1.216)
Beta-phosphoglucomutase hydrolase id=5032672 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1374_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12236..14509)
DNA (2274bp) protein (758aa)
Alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15); K00697 trehalose 6-phosphate synthase [EC:2.4.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha,alpha-trehalose-phosphate synthase (EC:2.4.1.15)
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) id=4183572 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_1374_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14534..14824)
DNA (291bp) protein (97aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=5015981 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1374_16
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14840..16393)
DNA (1554bp) protein (518aa)
h16_A2949; ABC transporter periplasmic protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Glutathione ABC transport system substrate binding protein GsiB id=4621965 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
h16_A2949; ABC transporter periplasmic protein
13_1_20cm_4_scaffold_1374_17
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16625..16999
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Rhodocyclaceae bacterium RZ94 RepID=UPI00037F0A42
56kDa selenium binding protein (SBP56) {ECO:0000313|EMBL:EHR68964.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales
Selenium-binding protein, putative
Displaying 17 items

View Taxonomy