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13_1_20cm_4_scaffold_1395

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1395_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1..375
DNA (375bp) protein (125aa)
RP1L1; retinitis pigmentosa 1-like 1 Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein id=2598292 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1395_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

392..1435
DNA (1044bp) protein (348aa)
peptidase S46 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Peptidase S46 id=2598295 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
periplasmic serine proteinase
13_1_20cm_4_scaffold_1395_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1726..1851
DNA (126bp) protein (42aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=2598302 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1395_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1848..3203)
DNA (1356bp) protein (452aa)
adenylosuccinate lyase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Adenylosuccinate lyase id=2598310 bin=GWA2_Methylomirabilis_73_35 species=Azotobacter vinelandii genus=Azotobacter taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
adenylosuccinate lyase
13_1_20cm_4_scaffold_1395_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3196..3534)
DNA (339bp) protein (113aa)
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histidine triad (HIT) protein id=4334202 bin=GWA2_Methylomirabilis_73_35 species=Thiothrix nivea genus=Thiothrix taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HIT family hydrolase, diadenosine tetraphosphate hydrolase
13_1_20cm_4_scaffold_1395_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3603..3725
DNA (123bp) protein (41aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=4334200 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1395_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3756..4625
DNA (870bp) protein (290aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
Beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y1I0_9FIRM
13_1_20cm_4_scaffold_1395_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(4638..6071)
DNA (1434bp) protein (478aa)
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=CSP1_6_Rokubacteria
dihydropyrimidinase; K01464 dihydropyrimidinase [EC:3.5.2.2] id=14625343 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
dihydropyrimidinase (EC:3.5.2.2)
13_1_20cm_4_scaffold_1395_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6090..6692
DNA (603bp) protein (201aa)
isochorismatase Tax=GWC2_Rokubacteria_70_16_curated
Isochorismatase family protein id=3635570 bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
isochorismatase hydrolase
13_1_20cm_4_scaffold_1395_10
unknown

Not on your lists

comp(6762..6995)
DNA (234bp) protein (78aa)

This feature has no annotations

13_1_20cm_4_scaffold_1395_11
unknown

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comp(6992..7183)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_20cm_4_scaffold_1395_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7421..9388)
DNA (1968bp) protein (656aa)
asparagine synthase Tax=GWA2_Rokubacteria_70_23_curated
Asparagine synthetase id=4814774 bin=GWC2_Methylomirabilis_70_16 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
asparagine synthase
13_1_20cm_4_scaffold_1395_13
unknown

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comp(9333..9704)
DNA (372bp) protein (124aa)

This feature has no annotations

13_1_20cm_4_scaffold_1395_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9731..10648)
DNA (918bp) protein (306aa)
arnT; undecaprenyl phosphate--lipid A 4-amino-4-deoxy-L-arabinose transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Dolichyl-phosphate-mannose-protein mannosyltransferase id=2315328 bin=GWA2_Methylomirabilis_73_35 species=Megasphaera micronuciformis genus=Megasphaera taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase
13_1_20cm_4_scaffold_1395_15
unknown

Not on your lists

comp(10956..11225)
DNA (270bp) protein (90aa)

This feature has no annotations

13_1_20cm_4_scaffold_1395_16
Burkholderiales bacterium JOSHI_001, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11625..12911
DNA (1287bp) protein (429aa)
Gluconolactonase n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WJY9_9BURK rbh
Gluconolactonase {ECO:0000313|EMBL:EHR70961.1}; Flags: Precursor;; TaxID=864051 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales.;" source="Burkholderiales bacterium JOSHI_001.;"
putative gluconolactonase
13_1_20cm_4_scaffold_1395_17
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13052..14317)
DNA (1266bp) protein (422aa)
h16_A1734; acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase-like protein (EC:3.5.1.-)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JPA8_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EWY36220.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella sti
13_1_20cm_4_scaffold_1395_18
Methanothermobacter marburgensis, Methanothermobacter, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14338..15351)
DNA (1014bp) protein (338aa)
Alanine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00935}; Short=AlaDH {ECO:0000256|HAMAP-Rule:MF_00935};; EC=1.4.1.1 {ECO:0000256|HAMAP-Rule:MF_00935};; TaxID=79929 species="Archaea; Euryarchaeota; Met
alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase n=1 Tax=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) RepID=D9PTZ2_METTM
13_1_20cm_4_scaffold_1395_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15402..16811)
DNA (1410bp) protein (470aa)
dihydropyrimidinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2] Tax=RBG_16_Betaproteobacteria_64_18_curated
dihydropyrimidinase (EC:3.5.2.2)
phenylhydantoinase n=1 Tax=Nodosilinea nodulosa RepID=UPI00030D0D17 rbh
Displaying 19 items

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