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13_1_20cm_4_scaffold_1561

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1561_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3..1751)
DNA (1749bp) protein (583aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pheT; phenylalanyl-tRNA synthetase subunit beta; K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] id=14627866 bin=bin7_NC10_sister species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pheT; phenylalanyl-tRNA synthetase subunit beta
13_1_20cm_4_scaffold_1561_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(1748..2854)
DNA (1107bp) protein (369aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=14627867 bin=bin7_NC10_sister species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
13_1_20cm_4_scaffold_1561_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(2858..3214)
DNA (357bp) protein (119aa)
rplT; 50S ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L20 id=3919662 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L20
13_1_20cm_4_scaffold_1561_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(3233..3430)
DNA (198bp) protein (66aa)
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L35 id=3919663 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Megamonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L35
13_1_20cm_4_scaffold_1561_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(3453..3932)
DNA (480bp) protein (160aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-3 id=3919664 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-3
13_1_20cm_4_scaffold_1561_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4036..5727)
DNA (1692bp) protein (564aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWC2_Rokubacteria_70_16_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase id=4178158 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_1561_trna_1
unknown

Not on your lists

comp(5849..5920)
DNA (72bp)
transferRNA
13_1_20cm_4_scaffold_1561_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5946..6440)
DNA (495bp) protein (165aa)
OmpA/MotB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein
TonB family protein id=4825345 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_20cm_4_scaffold_1561_8
unknown

Not on your lists

6616..6903
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_20cm_4_scaffold_1561_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6907..7923)
DNA (1017bp) protein (339aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) id=14628036 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aroG-2; 3-deoxy-7-phosphoheptulonate synthase
13_1_20cm_4_scaffold_1561_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8125..8838)
DNA (714bp) protein (238aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3779673 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_1561_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8857..10257)
DNA (1401bp) protein (467aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=14625475 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
amidase
13_1_20cm_4_scaffold_1561_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10287..11459
DNA (1173bp) protein (391aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1561_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11463..12683)
DNA (1221bp) protein (407aa)
cyclic nucleotide-binding protein Tax=GWA2_Rokubacteria_73_35_curated
cyclic nucleotide-binding protein id=14625478 bin=bin7_NC10_sister species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_1561_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12680..13180)
DNA (501bp) protein (167aa)
cyclic nucleotide-binding domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Cyclic nucleotide-binding protein id=3779687 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Alcanivorax taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cyclic nucleotide-binding protein
13_1_20cm_4_scaffold_1561_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13199..13468)
DNA (270bp) protein (90aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein id=3779689 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1561_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13526..13834
DNA (309bp) protein (103aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_1561_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13831..14814
DNA (984bp) protein (328aa)
hypothetical protein; K01989 putative ABC transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=3779692 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. CCGE-LA001 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1561_18
unknown

Not on your lists

14811..15056
DNA (246bp) protein (82aa)

This feature has no annotations

13_1_20cm_4_scaffold_1561_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15486..16031
DNA (546bp) protein (182aa)
Lytic transglycosylase, catalytic Tax=GWA2_Rokubacteria_73_35_curated
Lytic transglycosylase, catalytic id=3544309 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lytic transglycosylase, catalytic
13_1_20cm_4_scaffold_1561_20
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(16053..16703)
DNA (651bp) protein (217aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14626850 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_1561_21
CSP1_5_NC10, NC10, Bacteria

Not on your lists

16835..17794
DNA (960bp) protein (320aa)
periplasmic serine protease (EC:3.4.21.-)
hypothetical protein Tax=CSP1_5_NC10
hypothetical protein id=14428754 bin=bin3_NC10 species=Methanoculleus bourgensis genus=Methanoculleus taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=bin3_NC10 organism_group=NC10 rbh
13_1_20cm_4_scaffold_1561_22
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

comp(17888..18541)
DNA (654bp) protein (218aa)
hypothetical protein Tax=GWC2_Nitrospirae_57_13_curated
Uncharacterized protein id=1821595 bin=GWD2_Nitrospirae-related_57_8 species=Glaciecola psychrophila genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
Displaying 23 items

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