ggKbase home page

13_1_20cm_4_scaffold_1618

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1618_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

102..749
DNA (648bp) protein (216aa)
UPI0003CFE340 related cluster n=1 Tax=unknown RepID=UPI0003CFE340 rbh
Uncharacterized protein {ECO:0000313|EMBL:ESZ13044.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
13_1_20cm_4_scaffold_1618_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(686..1612)
DNA (927bp) protein (309aa)
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase (EC:2.1.1.107 4.2.1.75) id=14627063 bin=bin7_NC10_sister species=Chthonomonas calidirosea genus=Chthonomonas taxon_order=Chthonomonadales taxon_class=Chthonomonadetes phylum=Armatimonadetes tax=bin7_NC10_sister organism_group=NC10
uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase (EC:2.1.1.107 4.2.1.75)
13_1_20cm_4_scaffold_1618_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1603..2238)
DNA (636bp) protein (212aa)
siroheme synthase; K02304 precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
Siroheme synthase id=4894275 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
siroheme synthase
13_1_20cm_4_scaffold_1618_4
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(2241..3074)
DNA (834bp) protein (278aa)
Formate/nitrite transporter n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZVT4_OPITP rbh
Formate/nitrite transporter {ECO:0000313|EMBL:ACB75020.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / P
formate/nitrite transporter
13_1_20cm_4_scaffold_1618_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3095..4936)
DNA (1842bp) protein (614aa)
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1); K00366 ferredoxin-nitrite reductase [EC:1.7.7.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1)
Ferredoxin-nitrite reductase id=4453411 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1618_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5639..6064)
DNA (426bp) protein (142aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QCS1_RHOPT
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ACF00726.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseu
cupin
13_1_20cm_4_scaffold_1618_7
unknown

Not on your lists

comp(6371..6562)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_20cm_4_scaffold_1618_8
GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, GWF2_Methylomirabilis_70_14, Methylomirabilis, Bacteria

Not on your lists

comp(6620..6766)
DNA (147bp) protein (49aa)
Thiol-specific antioxidant protein, putative id=3831004 bin=GWF2_Methylomirabilis_70_14 species=Deinococcus radiodurans genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_1618_9
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6873..8276
DNA (1404bp) protein (468aa)
Efflux pump, RND family, outer membrane lipoprotein n=2 Tax=Geobacter metallireducens RepID=Q39V27_GEOMG rbh
RND efflux system, outer membrane lipoprotein, NodT Tax=RBG_13_Deltaproteobacteria_58_19_curated
efflux pump, RND family, outer membrane lipoprotein
Displaying 9 items

View Taxonomy